Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,488,993 | C→T | 8.7% | intergenic (+346/+225) | PP_3981 → / ← PP_3982 | transposase/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,488,993 | 0 | C | T | 8.7% | 164.0 / 4.2 | 57 | intergenic (+346/+225) | PP_3981/PP_3982 | transposase/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (24/28); new base T (2/3); total (26/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TGCCCAAGGCTCGACATTGCGCCATGACGACTGGAAAATGCAGGTTGTCGAAAATCCACCGATCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAAACTCTCCATAGGTGATGTCTGACGCCTGCCACATCAATACCGAGGTAACGAGTTTCACCACC > NC_002947/4488848‑4489135 | tGCCCAAGGCTCGACATTGCGCCATGACGACTGGAAAATGCAGGTTGTCTAAAATCCACCGATCGCCAAGATCAAGCATCGCGCCCAGCGTGTAGCTGAAGGATTAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTc < 1:72356/148‑1 (MQ=255) cccAAGGCTCGACATTGCGCCATGACGACTGGAAAATGCAGGTTGTCGAAAATCCACCGATCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTccc < 3:193909/148‑1 (MQ=255) ccAAGGCTCGACATTGCGCCATGACGACTGGAAAATGCAGGTTGTCGAAAATCCACCGATCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGc > 3:342062/1‑149 (MQ=255) cAAGGCTCGACATTGCGCCATGACGACTGGAAAATGCAGGTTGTCGAAAATCCACCGATCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGcc < 4:56008/149‑1 (MQ=255) aaGGCTCGACATTGCGCCATGACGACTGGAAACAGCAGGTTGTCGAAAATCCACCGATCGCCAACATCAAGCATCGCGCCCACCGTGCAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAGGTTCCCGccc < 2:153266/149‑1 (MQ=255) ggCTCGACATTGCGCCATGACGACTGGAAAATGCAGGTAGTCGAAAATCCACCGATCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAGGTTCCCGcccgt < 3:329330/149‑3 (MQ=255) cTCGACATTGCGCCATGACGACTGGAAAATGCAGGTTGTCGAAAATCCACCGATCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCatat > 6:173689/1‑149 (MQ=255) gACATTGCGCCATGACGACTGGAAAATGCAGGTTGTCGAAAATCCACCGATCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATgc < 5:173689/148‑1 (MQ=255) aCATTGCGCCATGACGACTGGAAAATGCAGGTTGTCGAAAATCCACCGATCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATgcgc < 4:169658/149‑1 (MQ=255) ttGCGCCATGACGACTGGAAAATGCAGGTTGTCGAAAATCCACCGATCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTa < 8:40032/149‑1 (MQ=255) ttGCGCCATGACGACTGGAAAATGCAGGTTGTCGAAAATCCACCGATCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTa < 5:293397/149‑1 (MQ=255) gcgcCATGACGACTGGAAAATGCAGGTTGTCGAAAATCCACCGATCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTAc < 8:12949/148‑1 (MQ=255) aTGACGACTGGAAAATGCAGGTTGTCGAAAATCCACCGATCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGTGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATa < 7:342755/149‑1 (MQ=255) cgacTGGAAAATGCAGGTTGTCGAAAATCCACCGATCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATACAGGGCGTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAgcgc < 2:151558/149‑1 (MQ=255) gacTGGAAAATGCAGGTTGTCGAAAATCCACCGATCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGcgcg > 7:290405/1‑149 (MQ=255) gAAAATGCAGGTTGTCGAAAATCCACCGATCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAAt > 7:60331/1‑149 (MQ=255) aaaaTGCAGGTTGTCGAAAATCCACCGATCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATc < 2:184614/149‑1 (MQ=255) aaaaTGCAGGTTGTCGAAAATCCACCGATCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATc < 4:342062/149‑1 (MQ=255) cAGGTTGTCGAAAATCCACCGATCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTc < 1:130705/148‑1 (MQ=255) tCGAAAATCCACCGATCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGAc < 7:109609/147‑1 (MQ=255) tCGAAAATCCACCGATCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGAc > 8:109609/1‑147 (MQ=255) gAAAATCCACCGATCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTca < 8:60331/149‑1 (MQ=255) aaaaTCCACCGATCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAAGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTACCGCCCATATgct > 1:60720/1‑110 (MQ=255) gATCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTg < 1:319188/149‑1 (MQ=255) aTCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTgg < 7:126684/149‑1 (MQ=255) tCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTg < 1:314351/147‑1 (MQ=255) tCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGCGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGc < 5:206327/149‑1 (MQ=255) ccAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACATGGGCGGGAGGTTCCCGCCCGTGTgcaa < 6:249589/97‑3 (MQ=37) ccAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACATGGGCGGGAGGTTCCCGCCCGTGTgcaa > 5:249589/1‑95 (MQ=37) gCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTgg > 5:140777/1‑135 (MQ=255) gCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTgg < 6:140777/135‑1 (MQ=255) gcCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAAActca > 2:248451/1‑148 (MQ=255) cctgCGTGGAGCTGTAGGATAAAGGGCTTATCTGAGGGCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAAActc < 8:21246/143‑1 (MQ=255) ccAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAAActc > 7:21246/1‑146 (MQ=255) cGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAAACTCACCATAg < 1:248451/149‑1 (MQ=255) ggAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAAACTCTCCATAGGt > 5:336032/1‑148 (MQ=255) gAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAAACTCTCCATAGGTGATGTCt > 6:220882/1‑149 (MQ=255) acggATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTa < 2:199241/65‑1 (MQ=255) aGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAAACTCTCCATAGGTGATGTCTGa > 7:151738/1‑149 (MQ=255) gATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAAACTCTCCATAGGTGATGTCTGACg > 5:45919/1‑149 (MQ=255) gATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAAACTCTCCATAGGTGATGTCTGACg > 7:168575/1‑149 (MQ=255) aaGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAAACTCTCCATAGGTGATGTCTGACGCCt < 5:220882/148‑1 (MQ=255) ggCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAAACTCTCCATAGGTGATGTCTGACGCCTGCca > 5:212634/1‑149 (MQ=255) tGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAAACTCTCCATAGGTGATGTCTGACGCCTGCCACATCa < 2:162403/146‑1 (MQ=255) tGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAAACTCTCCATAGGTGATGTCTGACGCCTGCCACATCa > 1:162403/1‑146 (MQ=255) tGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAAACTCTCCATAGGTGATGTCTGACGCCTGCCACATCAATa > 5:338740/1‑149 (MQ=255) tGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCACACATCTCACTTGGCTGAACTGGGCCTAAAACTCTCCATAGGTGATGTCTGACGCCTGCCACATCAATa > 6:143283/1‑149 (MQ=255) aGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAAACTCTCCATAGGTGATGTCTGACGCCTGCCACATCaa < 8:290405/145‑1 (MQ=255) gCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAAACTCTCCATAGGTGATGTCTGACGCCTGCCACATCAATACCGa < 5:143283/149‑1 (MQ=255) cttgcttgCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAAACTCTCCATAGGTGATGTCTGACGCCTGCCACATCAATACCGAgg > 4:360994/1‑149 (MQ=255) ttgcttgcACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAAACTCTCCATAGGTGATGTCTGACGCCTGCCACATCAATACCGAgg > 3:82056/1‑148 (MQ=255) ttgcACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAAACTCTCCATAGGTGATGTCTGACGCCTGCCACATCAATACCGAGGTAAc > 5:345108/1‑148 (MQ=255) atatgggcgggAGGTTCCCGCCCGTATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAAACTCTCCATAGGTGATGTCTGCCGCCTGCCACATCAATACCGAGGTAACGAGtt > 5:273303/5‑149 (MQ=255) cgggcgggAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAACCTCTCCATAGGTGATGTCTGACGCCTGCCACATCAATACCGAGGTAACGAGTTTca > 7:342909/1‑149 (MQ=255) gcgggAACCTCCCGCCCATATGCGCGTAATACATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAAACTCTCCATAGGTCATGTCTGACGCCTGCCACATCAATACCGAGGTAACCAGTTTcacca > 1:88179/1‑149 (MQ=255) cgggAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAAACTCTCCATAGGTGATGTCTGACGCCTGCCACATCAATACCGAGGTAACGAGTTTcaccac < 6:336032/149‑1 (MQ=255) gggAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAAACTCTCCATAGGTGATGTCTGACGCCTGCCACATCAATACCGAGGTAACGAGTTTCaccacc > 2:221787/1‑149 (MQ=255) | TGCCCAAGGCTCGACATTGCGCCATGACGACTGGAAAATGCAGGTTGTCGAAAATCCACCGATCGCCAAGATCAAGCATCGCGCCCAGCGTGGAGCTGAAGGATAAAGGGCTTATCTGAGGCCTTGCTTGCACACGGGCGGGAACCTCCCGCCCATATGCGCGTACTTCATAGCGCGACAATCCACTCCAAGACCTCACATCTCACTTGGCTGAACTGGGCCTAAAACTCTCCATAGGTGATGTCTGACGCCTGCCACATCAATACCGAGGTAACGAGTTTCACCACC > NC_002947/4488848‑4489135 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |