Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,503,789 | C→T | 13.1% | intergenic (+38/‑60) | xanP → / → tusD | xanthine permease/sulfur transfer protein complex subunit TusD |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,503,789 | 0 | C | T | 13.1% | 113.2 / 6.8 | 49 | intergenic (+38/‑60) | xanP/tusD | xanthine permease/sulfur transfer protein complex subunit TusD |
Reads supporting (aligned to +/- strand): ref base C (22/19); new base T (3/3); total (27/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.93e-01 |
CGCACATGCCGGCGGCGATTCGCAATGTGCTGGAGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTGCTGGCCGGCGG > NC_002947/4503642‑4503937 | cgcACATGCCGGCGGCGATTCGCAATGTGCTGGAGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGATTGAGAGTAGCCCGCGCCCGCTTGca < 5:96790/149‑1 (MQ=255) ccGGCGGCGATTCGCAATGTGCTGGAGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGTGCAAgcgg < 3:178742/148‑1 (MQ=255) cggcgATTCGCTTTGTGCGGGAGTCGGGTGTGCGTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGATTGAGAGTAGCCCGCGCCCGCTTGCACAAgcgggcgc‑g < 6:343013/149‑1 (MQ=255) ggcgATTCGCAATGTGCTGGAGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGTGCAAgcgggcgc‑gg < 5:287296/149‑1 (MQ=255) ccatCGCAATGTGCTGGAGTCGGGGGTGGCTAGCGGGGGGATGAGTCCGCTGGGGGTGAACGGGTTCTTGCCGGAGGGGAAGCAGC‑CGCCTGAACCGGTGAGCCGGAATGAGAGTAGCCCGCGCCGGCGGGGACGAgcgggcgc‑gggcg > 8:236373/4‑148 (MQ=255) gCAATGTGCTGGAGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCtttttt > 3:72344/1‑149 (MQ=255) gCAATGTGCTGGAGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCtttttt > 6:361317/1‑149 (MQ=255) gCAATGTGCTGGAGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCtttttt > 4:66690/1‑149 (MQ=255) aaTGTGCTGGAGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCTTTTTTGc > 3:253891/1‑149 (MQ=255) aaTGTGCTGGAGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCTTTTTTGc > 7:175187/1‑149 (MQ=255) tgtgCTGGAGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGTGGGCGC‑GGGCTTTTTTGCtt < 1:45369/149‑1 (MQ=255) tGGAGTCGGGTGTGGCTACCGGGGGGATTTCTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCa > 1:32913/1‑149 (MQ=255) gAGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCa < 8:117339/147‑1 (MQ=255) aGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATgg < 7:286076/149‑1 (MQ=255) gggTGTGGCTACCGAGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCGTTGTTGCGTTATCATGGCAc > 2:262106/1‑148 (MQ=255) ggCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑t > 4:75685/1‑149 (MQ=255) cTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑ttt < 4:72344/149‑1 (MQ=255) tACCGGGGGGATTTGTGCGCTGATGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCATGCACAAGCGGGCGC‑GGGCtatt > 7:234032/1‑122 (MQ=255) cGGGGGGATTTGTTCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCa < 3:225242/148‑1 (MQ=255) cGGGGGGATTTGTGCGCTGGTGCTGAACTGGTGCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGACTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCAt < 7:60031/149‑1 (MQ=255) gggggATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCATGa < 5:153396/149‑1 (MQ=255) aTTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCATGAGTTAg < 3:50729/149‑1 (MQ=255) tgCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCATGAGTTAGCCAt < 3:66690/148‑1 (MQ=255) cTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCATGAGTTAGCCATGAAATTCGCTATcgcg < 4:253891/149‑1 (MQ=255) gTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCATGAGTTAGCCATGAAATTCGCTATCGCGgtg < 4:113208/149‑1 (MQ=255) gTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCGTTTTTGCTTTATCATGGCACCATTCC‑TTTGCATGAGTTAGCCATGAAATTCGCTATCGCGgtg > 5:334452/1‑149 (MQ=255) gTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCGTTTTTGCGTTATAAAGGCACCATTCC‑TTTGCATGAGTTAGCCATGAAATTAGCGATCGCGgtg > 6:111826/1‑149 (MQ=255) tCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCCCCAGCGGGCGC‑GGGCTTTTTTGCTTTATCAAGGCACCATTCC‑TTTGCATGAGTTAGCCATGAAATTCGCTATCGCGgtgt > 8:80664/1‑148 (MQ=255) tCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGtt > 1:95376/1‑149 (MQ=255) ccGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTcc < 8:175187/148‑1 (MQ=255) aGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATgc < 2:95376/149‑1 (MQ=255) gCTAGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCGCtt > 2:78856/1‑149 (MQ=255) ttGAACC‑TTGAGTCTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCATGa < 3:239030/94‑1 (MQ=255) ttGAACC‑TTGAGTCTGAATGAGAGTAGCCCGCGCCCCCATGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGTGACCATTCC‑ATTGCATGa > 4:239030/1‑94 (MQ=255) ttGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCCCGTGGCCAAGCGGGGGCGGGGGTTTTTTGGTTT‑TGAAGGGACCCGTGC‑GTTGGATGGGGTATGCATGAAAATAGCGTTAGCGGGGGTGTCCCCCGCCCCTGCGcccgcgtgg > 2:353680/1‑143 (MQ=255) aaCC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATAATGGCACCATTCC‑TTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGa > 3:45681/1‑149 (MQ=255) aCTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTtc < 4:221670/113‑1 (MQ=255) aCTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTtc > 3:221670/1‑113 (MQ=255) gAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGGGC‑GGGCTTTTTTGGTTTATCATGGGACCATTCC‑GTTGGATGAGTTAGCCATGGAATTAGCTATCGCGGTGTTGTCCCCGGCACATGCGCCCTCTTAGCGAAGCGCCCTgcgc > 2:25761/1‑149 (MQ=255) ccccgcgcccgcTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTGATCATGGCACCATTCC‑TTTGCATGAGTTAGCCCTGAAATTCGCTCTCGCGGTGGTCTCCCCGGCCCCTGCGCCCTCTTCGCGAAGCGCAGGGCGCGTCGcgaagt < 7:236373/147‑6 (MQ=255) gcgcccgcTTGTGCAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTg > 1:143576/1‑149 (MQ=255) gcgcccgcTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTg > 4:105486/1‑149 (MQ=255) cgcccgcTTGTGCAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTGc > 1:342255/1‑149 (MQ=255) gcccgcTTGTGCAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTg < 7:20168/147‑1 (MQ=255) gcccgcTTGTGCAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTg > 8:20168/1‑147 (MQ=255) ccgcTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCCGTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTGCTg > 1:276889/1‑149 (MQ=255) ccgcTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTGCTgg < 4:45681/149‑1 (MQ=255) ttGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTGCTGGCcgg > 3:40511/1‑149 (MQ=255) ttGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTGCTGGCcgg > 1:234407/1‑149 (MQ=255) gCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTGCTGGCcggc < 1:25761/148‑1 (MQ=255) cacaAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTGCTGGCcggcgg < 5:361317/149‑1 (MQ=255) | CGCACATGCCGGCGGCGATTCGCAATGTGCTGGAGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACC‑TTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGC‑GGGCTTTTTTGCTTTATCATGGCACCATTCC‑TTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTGCTGGCCGGCGG > NC_002947/4503642‑4503937 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |