Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,568,498 | A→T | 7.0% | E143V (GAA→GTA) | malQ → | 4‑alpha‑glucanotransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,568,498 | 0 | A | T | 7.0% | 161.0 / 2.3 | 57 | E143V (GAA→GTA) | malQ | 4‑alpha‑glucanotransferase |
Reads supporting (aligned to +/- strand): ref base A (27/26); new base T (2/2); total (29/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.78e-01 |
CCTGGAAGATCACACCTCTGTCACCCTCAGCCTCGATGACCAGGCGCGCCTGCCCGGCGAGCTGCCCATCGGCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTGGCGCTGGAGCAGTTGGCCCGCTCGGCCGCCGAGCGCGGCGCCGATGCC > NC_002947/4568352‑4568640 | ccTGGAAGATCACACCTCTGTCACCCTCAGCCTCGATGACCAGGCGCGCCTGCCCGGCGAGCTGCCCATCGGCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGgaagaa > 4:161639/1‑148 (MQ=255) gAAGATCACACCTCTGTCACCCTCAGCCTCGATGACCAGGCGCGCCTGCCCGGCGAGCTGCCCATCGGCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAg < 2:84829/147‑1 (MQ=255) gAAGATCACACCTCTGTCACCCTCAGCCTCGATGACCAGGCGCGCCTGCCCGGCGAGCTGCCCATCGGCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGt < 4:26561/149‑1 (MQ=255) gAAGATCACACCTCTGGCACCCTCAGCCTCGATGACCAGGCGCGCCTGCCCGGCGAGCTGCCCATCGGCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCGGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGt < 5:245347/149‑1 (MQ=255) aGATCACACCTCTGTCACCCTCAGCCTCGATGACCAGGCGCGCCTGCCCGGCGAGCTGCCCATCGGCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGc < 3:161639/149‑1 (MQ=255) gATCACACCTCTGTCACCCTCAGCCTCGATGACCAGGCGCGCCTGCCCGGCGAGCTGCCCATCGGCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACGGCCTGGAAGAAAAGGTGc > 1:285373/1‑148 (MQ=255) acCTCTGTCACCCTCAGCCTCGATGACCAGGCGCGCCTGCCCGGCGAGCTGCCCATCGGCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAgcc > 8:29370/1‑149 (MQ=255) acCTCTGTCACCCTCAGCCTCGATGACCAGGCGCGCCTGCCCGGCGAGCTGCCCATCGGCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAgcc < 7:29370/149‑1 (MQ=255) acCTCTGTCACCCTCAGCCTCGATGACCAGGCGCGCCTGCCCGGCGAGCTGCCCATCGGCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAgcc < 2:354056/149‑1 (MQ=255) ctctGTCACCCTCAGCCTCGATGACCAGGCGCGCCTGCCCGGCGAGCTGCCCATCGGCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGt > 6:207762/1‑138 (MQ=255) ctctGTCACCCTCAGCCTCGATGACCAGGCGCGCCTGCCCGGCGAGCTGCCCATCGGCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGt < 5:207762/138‑1 (MQ=255) ctctGTCACCCTCAGCCTCGATGACCAGGCGCGCCTGCCCGGCGAGCTGCCCATCGGCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAgccgc > 1:345424/1‑149 (MQ=255) ctctGTCACCCTCAGCCTCGATGACCAGGCGCGCCTGCCCGGCGAGCTGCCCATCGGCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAgccgc > 4:137165/1‑149 (MQ=255) ccTCGATGACCAGGCGCGCCTGCCCGGCGAGCTGCCCATCGGCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTggg > 7:208255/1‑149 (MQ=255) ccTCGATGACCAGGCGCGCCTGCCCGGCGAGCTGCCCATCGGCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTggg < 3:137165/149‑1 (MQ=255) ccAGGCGCGCCTGCCCGGCGAGCTGCCCATCGGCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGTTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAg > 5:195373/1‑149 (MQ=255) cgcgcCTGCCCGGCGAGCTGCCCATCGGCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAg < 1:313437/149‑1 (MQ=255) cTGCCCGGCGAGCTGCCCATCGGCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTa > 2:66108/1‑149 (MQ=255) ccGGCGAGCTGCCCATCGGCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAgccgc < 8:291032/111‑1 (MQ=255) ccGGCGAGCTGCCCATCGGCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAgccgc > 7:291032/1‑111 (MQ=255) gAGCTGCCCATCGGCTATGACCAGGTGGAAATCGACAGCCGCAGCTTAACAGTGGCAGTGGCGCAAACACGCTGTCACCGCCTCGAAGAAAAGGTGCAACAGCCGACACCACGCAGAAGTGGCCTGTCAGTGCAGCTGTACAGCCTgcg > 6:274778/1‑149 (MQ=255) ccATCGGCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAgg > 6:170794/1‑87 (MQ=255) ccATCGGCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAgg < 5:170794/87‑1 (MQ=255) cATCGGCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCg > 1:362277/1‑149 (MQ=255) ctCGGCTATCCCCAGGTGCACATCGACAGCCGCCGCGTCACCGTGGCAGTGGCCCCAACACCCTGGCACCGCCTCGAAGAACAGGTCCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCAGTACAGCCTGCGCCGCCCCgg < 6:195373/148‑1 (MQ=255) ggCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTgc > 6:130913/1‑136 (MQ=255) ggCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTgc < 5:130913/136‑1 (MQ=255) tCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCTCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATggg < 5:274778/148‑1 (MQ=255) cACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATggggg > 6:307237/1‑149 (MQ=255) ccAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCt > 4:365280/1‑149 (MQ=255) ggAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGc > 2:33642/1‑148 (MQ=255) ggAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGACGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGCGGCTTCGGc > 7:180317/1‑148 (MQ=255) aaaTCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGAc < 7:308172/149‑1 (MQ=255) gACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGTCGCCCCGGCGATGGGGGCTTCGGCGACTGCCt < 8:208255/149‑1 (MQ=255) aCAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTg > 3:313378/1‑149 (MQ=255) aGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTGgc < 3:365280/149‑1 (MQ=255) aGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTGgc > 1:165791/1‑149 (MQ=255) gccgcTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTGGCGCTg > 4:21240/1‑149 (MQ=255) cgcTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGACGAAAAGCTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTGGCGCTGGa < 8:290829/149‑1 (MQ=255) cACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTGGCGCTGGAGCa < 2:238302/147‑1 (MQ=255) cACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTGGCGCTGGAGCa < 1:33642/147‑1 (MQ=255) cACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTGGCGCTGGAGCAg < 2:362277/148‑1 (MQ=255) aCCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGTAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTGGCGCTGGAGCAGtt > 3:259059/1‑149 (MQ=255) cGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTGGCGCTGGAGCAGTTgg > 3:40795/1‑149 (MQ=255) gTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTGGCGCTGGAGCAGTTGGc < 4:313378/149‑1 (MQ=255) ggCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTGGCGCTGGAGCAGTTGGccc > 7:72976/1‑149 (MQ=255) cgcCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCGGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTGGCGCTGGAGCAGTTGGCCCGCTCGgcc < 7:263559/149‑1 (MQ=255) gcCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTGGCGCTGGAGCAGTTGGCCCGCTCGgccg < 8:72976/149‑1 (MQ=255) tGTCACAGCCTGGAAGTAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTGGCGCTGGAGCAGTTGGCCCGCTCGGCGGCCGAgcgggc > 6:281694/1‑146 (MQ=255) tGTCACAGCCTGGAAGTAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTGGCGCTGGAGCAGTTGGCCCGCTCGGCGGCCGAgcgggc > 6:276573/1‑146 (MQ=255) tCACAGCCTGGAAGTAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTGGCGCTGGAGCAGTTGGCCCGCTCGGCGGCCGAgcgggc < 5:276573/147‑4 (MQ=255) tCACAGCCTGGAAGTAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTGGCGCTGGAGCAGTTGGCCCGCTCGGCGGCCGAgcgggc < 5:281694/147‑4 (MQ=255) tCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTGGCGCTGGAGCAGtt > 7:277853/1‑123 (MQ=255) tCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTGGCGCTGGAGCAGtt < 8:277853/123‑1 (MQ=255) acaGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTGGCGCTGGAGCAGTTGGCCCGCTCGGCCGCCGAGCGCGGCGcc > 2:157813/1‑149 (MQ=255) caGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTGGCGCTGGAGCAGTTGGCCCGCTCGGCGGCCGAgcgg > 4:198014/1‑141 (MQ=255) caGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTGGCGCTGGAGCAGTTGGCCCGCTCGGCGGCCGAgcgg < 3:198014/142‑2 (MQ=255) tGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTGGCGCTGGAGCAGTTGGCCCGCTCGGCCGCCGCGCGCGGCGCCGATGcc > 7:19450/1‑149 (MQ=255) | CCTGGAAGATCACACCTCTGTCACCCTCAGCCTCGATGACCAGGCGCGCCTGCCCGGCGAGCTGCCCATCGGCTATCACCAGGTGGAAATCGACAGCCGCCGCTTCACCGTGGCAGTGGCGCCAACACGCTGTCACAGCCTGGAAGAAAAGGTGCAACAGCCGCCACCACGCTGCTGGGGCCTGGCAGTGCAGCTGTACAGCCTGCGCCGCCCCGGCGATGGGGGCTTCGGCGACTGCCTGGCGCTGGAGCAGTTGGCCCGCTCGGCCGCCGAGCGCGGCGCCGATGCC > NC_002947/4568352‑4568640 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |