| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,986,592 | A→T | 6.0% | intergenic (+81/‑84) | flgA → / → flgM | flagella basal body P‑ring formation protein/flagellin biosynthesis negative regulator FlgM |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,986,592 | 0 | A | T | 6.0% | 253.8 / 2.9 | 81 | intergenic (+81/‑84) | flgA/flgM | flagella basal body P‑ring formation protein/flagellin biosynthesis negative regulator FlgM |
| Reads supporting (aligned to +/- strand): ref base A (37/39); new base T (3/2); total (40/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.06e-01 | |||||||||||
CCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGG > NC_002947/4986445‑4986734 | ccTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAg > 8:185071/1‑149 (MQ=255)ccTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAg > 2:11665/1‑149 (MQ=255) tCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCaa > 5:73497/1‑149 (MQ=255) cAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAAt < 5:125829/148‑1 (MQ=255) gcgTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCAttt < 6:73497/149‑1 (MQ=255) gcgTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCAttt < 4:311587/149‑1 (MQ=255) gcgTGGGCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGCACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCAttt < 2:93561/149‑1 (MQ=255) cgTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTtg > 3:137915/1‑149 (MQ=255) gTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTtgt < 2:346687/149‑1 (MQ=255) ggTCCAGGCCAGGGTGCCCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGc < 8:292919/149‑1 (MQ=255) ggTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGc < 7:86887/149‑1 (MQ=255) aGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAATACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTa > 2:196421/1‑147 (MQ=255) ccAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACTGGCGGCAATGCATTTGTGCCTAAAGtt < 1:11665/149‑1 (MQ=255) aGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTta < 3:94477/149‑1 (MQ=255) ggTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTtata > 5:279128/1‑149 (MQ=255) gACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCg < 5:11915/149‑1 (MQ=255) aCCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCgg < 4:189490/149‑1 (MQ=255) ccGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCggg > 1:201816/1‑149 (MQ=255) cAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGaaaa < 2:201816/149‑1 (MQ=255) cAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGaaaa > 7:266293/1‑149 (MQ=255) ggTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGc < 5:95325/113‑1 (MQ=255) ggTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGc > 6:95325/1‑113 (MQ=255) ggTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCaa < 2:7345/149‑1 (MQ=255) cAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCg > 4:43345/1‑149 (MQ=255) gTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCaaa > 7:28855/1‑149 (MQ=255) tAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCaaa < 7:185071/148‑1 (MQ=255) tAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATAcc > 1:269541/1‑147 (MQ=255) tAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATAcc > 4:17175/1‑147 (MQ=255) gCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTTAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCa < 1:129738/147‑1 (MQ=255) ccaccaGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCagag < 3:43345/149‑1 (MQ=255) caccaGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCAGTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAgg > 6:58798/1‑149 (MQ=255) accaGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCATTGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGt > 4:118946/1‑149 (MQ=255) accaGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGCCTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTAGGCCGAAAACAAGCCAACCGTCCAAATACCCAGAGGt > 1:158891/1‑149 (MQ=255) caGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGttt > 6:1628/1‑149 (MQ=255) aGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTc < 2:29891/149‑1 (MQ=255) aGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTc < 6:187141/149‑1 (MQ=255) ttGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGa < 8:266293/149‑1 (MQ=255) gcgcTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGAt < 2:269541/148‑1 (MQ=255) cgcTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCa > 1:296207/1‑149 (MQ=255) cTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATg < 7:104171/149‑1 (MQ=255) tGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCaa < 4:342840/70‑1 (MQ=255) tGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCaa > 3:342840/1‑70 (MQ=255) gTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATc < 4:333345/149‑1 (MQ=255) aCCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACtt > 4:232809/1‑147 (MQ=255) ccGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAg < 3:232809/149‑1 (MQ=255) gCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCaa < 5:130185/102‑1 (MQ=255) gCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCaa > 6:130185/1‑102 (MQ=255) cTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCg > 6:197107/1‑149 (MQ=255) cTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCg > 6:74500/1‑149 (MQ=255) tCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGttt < 6:279128/148‑1 (MQ=255) cTAAACTGTGACACAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAAAGAATTTCTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCCTCCAAATACCCAGAGGATTCTGATCATGGTCATAGACTTCAGTCgaatga > 6:161750/1‑143 (MQ=255) tAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGaa > 6:217378/1‑148 (MQ=255) tAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGACGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGaa > 3:91799/1‑148 (MQ=255) aCTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTTCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATaa < 7:3794/148‑1 (MQ=255) aCTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATAcc > 3:355350/1‑104 (MQ=255) aCTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATAcc < 4:355350/104‑1 (MQ=255) aCTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAAc > 6:68346/1‑149 (MQ=255) aCTGTGTCAGAACACGGGTTCGCGGGCTTGCCGAAAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAAc > 6:73753/1‑149 (MQ=255) tgtCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAActct < 5:197107/148‑1 (MQ=255) tgtCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAActct < 4:137915/148‑1 (MQ=255) tCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCg > 3:324917/1‑64 (MQ=255) tCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCg < 4:324917/64‑1 (MQ=255) tCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAg > 5:377240/1‑130 (MQ=255) tCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAg < 6:377240/130‑1 (MQ=255) tCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCtccg > 1:125788/1‑149 (MQ=255) aGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCtccgtc > 2:215781/1‑149 (MQ=255) aGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCtccgt < 2:296207/148‑1 (MQ=255) gAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCtccgtcc > 6:281723/1‑149 (MQ=255) gAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCtccgtcc > 8:181464/1‑149 (MQ=255) acGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTATGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCa > 6:33492/1‑149 (MQ=255) ggTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACgg < 5:1628/149‑1 (MQ=255) cgcgGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGggcg < 8:28855/148‑1 (MQ=255) aaatgcattGCCGCCTGTCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGggcgg > 2:64898/8‑149 (MQ=255) gcgGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGCCCGTGacggacgga < 5:68346/149‑2 (MQ=255) atgcattGCCGCCTGTCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACggg > 1:10712/6‑144 (MQ=255) atgcattGCCGCCTGTCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACggg < 2:10712/139‑1 (MQ=255) gggCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGCCCGTGacggacgga < 5:73753/147‑2 (MQ=255) gCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAATCAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTgc < 5:161750/149‑1 (MQ=255) gCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTgc > 5:98843/1‑149 (MQ=255) cattGCCGCCTGTCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTgc > 6:217560/3‑149 (MQ=255) ccGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCgg < 5:217378/148‑1 (MQ=255) | CCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGGTTGGCCGAAAACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGG > NC_002947/4986445‑4986734 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |