Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,118,197 | A→G | 6.6% | intergenic (+29/‑30) | PP_4504 → / → PP_4505 | hypothetical protein/sensor histidine kinase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,118,197 | 0 | A | G | 6.6% | 216.6 / 4.7 | 75 | intergenic (+29/‑30) | PP_4504/PP_4505 | hypothetical protein/sensor histidine kinase |
Reads supporting (aligned to +/- strand): ref base A (30/40); new base G (3/2); total (33/42) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.49e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.11e-01 |
CACGGCTGACCAGCAGAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGC > NC_002947/5118054‑5118333 | cACGGCTGACCAGCAGAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGcg > 1:113927/1‑149 (MQ=255) aCGGCTGACCAGCAGAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGcgg > 5:198578/1‑149 (MQ=255) ggCTGACCAGCAGAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGcgggc < 1:289357/149‑1 (MQ=255) ggCTGACCAGCAGAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCACATGCCCGGCCCGCATCACTGcgggc > 1:65588/1‑149 (MQ=255) tGACCAGCAGAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCAAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGcgggccgg > 6:183403/1‑149 (MQ=255) aCCAGCAGAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGcgggccgggc > 8:138146/1‑149 (MQ=255) aCCAGCAGAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGcgggccgg < 6:152744/147‑1 (MQ=255) aCCAGCAGAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTCaggtccgggc > 8:133210/1‑149 (MQ=255) cagcagAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCtt > 8:305750/1‑149 (MQ=255) cagcagAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCAGTGATGcgggccgggcat > 1:224946/1‑147 (MQ=255) cagcagAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCAGTGATGcgggccgggcat < 7:209292/149‑3 (MQ=255) cagcagAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGAAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCtt < 5:103994/149‑1 (MQ=255) agcagAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCttt > 7:49530/1‑149 (MQ=255) agcagAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCAGTGATGcgggccgggcatg < 2:224946/149‑4 (MQ=255) agcagAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCCGCCCGCCTCACTGcgggccggcgttt > 8:330744/1‑144 (MQ=255) gcagAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCtttt > 8:168462/1‑149 (MQ=255) cagAACAAGTTTGACCAACTCCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGCCCTGGAAAGCTGAAAAAGGCGCCAAGCCCCAGTAAGCTGTCCGCCCCTTGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTc < 6:43039/149‑1 (MQ=255) aagaagTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCg > 4:305154/1‑149 (MQ=255) gaagTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGtt > 2:196619/1‑149 (MQ=255) aagTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGttt < 5:184364/149‑1 (MQ=255) gTTTGACGAACTGCAAACAGAACGCGCCGCCAAGAACCCCGAGGGGCAGGAGTGCCAGGCCGGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTag < 5:311205/149‑1 (MQ=255) gTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGc > 3:124793/1‑127 (MQ=255) gTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGc < 4:124793/127‑1 (MQ=255) gTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTGCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATCCCCGCCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTag < 5:240147/149‑1 (MQ=255) tttGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTagg < 3:362159/149‑1 (MQ=255) gACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTaggag < 3:305154/148‑1 (MQ=255) gACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCACGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTaggag < 8:17939/148‑1 (MQ=255) aCTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCAc < 2:91987/149‑1 (MQ=255) gCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCAAGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTg > 3:113482/1‑149 (MQ=255) gCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCAAGCCCCGCCCGCATCACTGCGGCCCGCGCGTATCGGGTGTAGGCGATGCCCTTg > 3:213979/1‑149 (MQ=255) cAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACtt < 6:182716/147‑1 (MQ=255) cAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGc > 6:189848/1‑149 (MQ=255) cAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGc < 8:182035/149‑1 (MQ=255) aaaGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGtt < 7:307236/149‑1 (MQ=255) aaaGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGtt < 7:168462/149‑1 (MQ=255) aaaGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGtt > 6:48204/1‑149 (MQ=255) gccgccAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAACGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCt > 3:226722/1‑149 (MQ=255) ccgccAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTg < 8:2855/149‑1 (MQ=255) ccAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGgcg > 6:137698/1‑149 (MQ=255) aGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTg < 7:305750/149‑1 (MQ=255) aGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTg < 4:5116/149‑1 (MQ=255) ccGAGTGGCAGGAGTTCCAGGCCTCGAAAGCTGAAAAACCCGCCAAGGCCCAGTAACCAGTCCGCCCCATGCCCGGCCCGCATCACTGCGGTCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGc < 4:300947/149‑1 (MQ=255) gAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCCAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACt > 5:256387/1‑119 (MQ=255) gAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACt < 6:256387/119‑1 (MQ=255) gCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTc > 1:272780/1‑149 (MQ=255) gCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATAACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTc > 1:343677/1‑149 (MQ=255) cAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTct < 5:189848/149‑1 (MQ=255) cAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTct < 5:48204/149‑1 (MQ=255) aGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTctg > 2:167756/1‑149 (MQ=255) ggAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTctgg < 3:110967/149‑1 (MQ=255) ttCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTctggctgg > 8:98346/1‑149 (MQ=255) tCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCtggctggc > 5:366838/1‑149 (MQ=255) tGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCAccc > 7:62977/1‑149 (MQ=255) gAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCt < 8:49530/148‑1 (MQ=255) gAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCAAGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTg < 4:113482/149‑1 (MQ=255) aaaGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCa > 7:292926/1‑116 (MQ=255) aaaGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCa < 8:292926/116‑1 (MQ=255) aaaGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTgg < 1:167756/149‑1 (MQ=255) tGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCg > 3:262655/1‑147 (MQ=255) aaaaaGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAg < 6:198578/148‑1 (MQ=255) aaaaGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGc < 5:183403/149‑1 (MQ=255) cgcCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCg < 2:343677/149‑1 (MQ=255) gCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCctgc < 7:133210/149‑1 (MQ=255) gCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCctgc < 7:138146/149‑1 (MQ=255) ccAGTAAGCTGTCCGCCCGATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCctgctg < 7:330744/149‑1 (MQ=255) ccAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCctgctg > 4:108135/1‑149 (MQ=255) cAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTgg < 7:98346/149‑1 (MQ=255) gTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTgggg < 7:213987/149‑1 (MQ=255) cTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACAt < 4:226722/149‑1 (MQ=255) tCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATg < 2:113927/147‑1 (MQ=255) cccATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAAc > 2:158030/1‑148 (MQ=255) cATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAg < 1:158030/149‑1 (MQ=255) cccggcccgCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGAc < 1:196619/148‑1 (MQ=255) ccggcccgCAGTGATGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGc > 2:200288/1‑149 (MQ=255) ccggcccgCAGTGATGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGc > 6:14067/1‑149 (MQ=255) | CACGGCTGACCAGCAGAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGC > NC_002947/5118054‑5118333 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |