| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,463,401 | T→A | 8.7% | intergenic (‑52/+47) | PP_4799 ← / ← lipA | muramoyltetrapeptide carboxypeptidase/lipoyl synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,463,401 | 0 | T | A | 8.7% | 223.2 / 10.2 | 80 | intergenic (‑52/+47) | PP_4799/lipA | muramoyltetrapeptide carboxypeptidase/lipoyl synthase |
| Reads supporting (aligned to +/- strand): ref base T (34/39); new base A (4/3); total (38/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.03e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.17e-01 | |||||||||||
CAAGCCGCGCCGCGCCCGCCGGGGCGACAATGGCAAAACATGCGTTGGCCGGCAGCGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAACGTTCTTGAAGCCCATCTTGTAACCT > NC_002947/5463253‑5463547 | cAAGCCGCGCCGCGCCCGCCGGGGCGACAATGGCAAAACATGCGTTGGCCGGCAGCGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCAGTGGACACAAACAAAAATGCCGATGC‑CGCCCtt > 5:203605/1‑149 (MQ=255) aGCCGCGCCGCGCCCGCCGGGGCGACAATGGCAAAACATGCGTTGGCCGGCAGCGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTgg < 3:159148/149‑1 (MQ=255) gcgccgcgccCGCCGGGGCGACAATGGCAAAACATGCGTTGGCCGGCAGCGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGgcgc < 5:226940/149‑1 (MQ=255) gcgccgcgccCGCCGGGGCGACAATGGCAAAACATGCGTTGGCCGGCAGCGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGgcgc > 7:106286/1‑149 (MQ=255) gcgccgcgccCGCCGGGGCGACAATGGCAAAACATGCGTTGGCCGGCAGCGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGgcgc < 2:139576/149‑1 (MQ=255) gcgccCGCCGGGGCGACAATGGCAAAACATGCGTTGGCCGGCAGCGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATc < 4:130392/149‑1 (MQ=255) cgcccgccGGGGCGACAATGGCAAAACATGCGTTGGCCGGCAGCGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCg < 7:11641/149‑1 (MQ=255) gccgGGGCGACAATGGCAAAACATGCGTTGGCCGGCAGCGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATc > 7:318295/1‑149 (MQ=255) ggggCGACAATGGCAAAACATGCGTTGGCCGGCAGCGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCtgt < 3:164749/149‑1 (MQ=255) ggggCGACAATGGCAAAACATGCGTTGGCCGGCAGCGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCtgt < 1:83703/149‑1 (MQ=255) gACAATGGCAAAACATGCGTTGGCCGGCAGCGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTc > 4:354420/1‑149 (MQ=255) aCAATGGCAAAACATGCGTTGGCCGGCAGCGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTcc > 5:211962/1‑149 (MQ=255) aaTGGCAAAACATGCGTTGGCCGGCAGCGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCg < 1:107954/133‑1 (MQ=255) aaTGGCAAAACATGCGTTGGCCGGCAGCGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCg > 2:107954/1‑133 (MQ=255) gCAAAACATGCGTTGGCCGGCAGTGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGctc > 7:145842/1‑147 (MQ=255) gCAAAACATGCGTTGGCCGGCAGCGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGctct < 4:233341/148‑1 (MQ=255) gCAAAACATGCGTTGGCCGGCAGCGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTa < 3:160927/149‑1 (MQ=255) aTGCGTTGGCCGGCAGCGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGTTaga < 8:318295/149‑1 (MQ=255) gTTGGCCGGCAGCGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACCTCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑At < 4:4996/149‑1 (MQ=255) ttGGCCGGCAGCGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATa < 5:109932/149‑1 (MQ=255) aGCGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGc > 6:351925/1‑149 (MQ=255) cgcgGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCtt < 4:63773/149‑1 (MQ=255) ggCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGa > 8:199575/1‑148 (MQ=255) cTGGCAGGGTTGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCt < 3:273264/149‑1 (MQ=255) cTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATc < 2:334440/148‑1 (MQ=255) cTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATc > 1:334440/1‑148 (MQ=255) ggCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTg < 8:106286/149‑1 (MQ=255) gCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTgg > 8:33096/1‑149 (MQ=255) ggtgggtTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTc > 8:352616/1‑149 (MQ=255) gggtTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAg > 4:266284/1‑124 (MQ=255) gggtTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAg < 3:266284/124‑1 (MQ=255) ggtTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTgg > 8:283278/1‑149 (MQ=255) ttGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGc < 1:187730/149‑1 (MQ=255) ggAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTa < 4:179038/111‑1 (MQ=255) ggAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTa > 3:179038/1‑111 (MQ=255) aaGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCctgc < 5:351925/149‑1 (MQ=255) aaGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCctgc > 4:287536/1‑149 (MQ=255) aGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCctgct > 6:83559/1‑149 (MQ=255) ggTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCctgctg < 8:145842/149‑1 (MQ=255) gTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTgg > 4:224314/1‑149 (MQ=255) gcgcAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCg < 3:314104/149‑1 (MQ=255) gcgcAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCg < 7:81510/149‑1 (MQ=255) gcAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTg < 6:203605/149‑1 (MQ=255) cAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTgg > 6:92158/1‑149 (MQ=255) aGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGt < 2:182241/149‑1 (MQ=255) gTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTa < 3:354420/149‑1 (MQ=255) tCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACgaag < 1:258095/149‑1 (MQ=255) tCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACg > 8:167491/1‑146 (MQ=255) cgcgGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACgaag > 4:208971/1‑148 (MQ=255) cgGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAAc < 5:83559/149‑1 (MQ=255) cgGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAAc < 7:283278/149‑1 (MQ=255) cgGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAAc < 3:287536/149‑1 (MQ=255) cTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCAc > 1:367452/1‑147 (MQ=255) gACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGc > 2:356100/1‑148 (MQ=255) gACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGc < 7:199575/148‑1 (MQ=255) cacaAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAAc > 5:310170/1‑149 (MQ=255) acaaacaaAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAACg > 5:284229/1‑149 (MQ=255) aaacaaaAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAACGtt > 7:108645/1‑149 (MQ=255) aaacaaaAATCCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAACGtt > 3:77272/1‑149 (MQ=255) aacaaaAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCa > 2:333427/1‑129 (MQ=255) aacaaaAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCa < 1:333427/129‑1 (MQ=255) aacaaaAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAACGTTc > 7:117640/1‑149 (MQ=255) caaaAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAACGTTCtt > 8:348726/1‑149 (MQ=255) gatgccgatgcgcGCCCAAGGGCG‑GCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAACGTTCTTGAAg > 5:309267/2‑149 (MQ=255) atgccgatgcgcGCCCAAGGGCG‑GCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAACGTTCtt < 8:141582/144‑1 (MQ=255) atgccgatgcgcGCCCAAGGGCG‑GCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAACGTTCTTGagat > 7:141582/1‑146 (MQ=255) atgccgatgc‑cgCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAACGTTCTTGAAGc < 3:208971/149‑1 (MQ=255) gccgatgcgcGCCCAAGGGCG‑GCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAACGTTCTTGAAGcc > 4:71182/1‑148 (MQ=255) ccgatgc‑cgCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAACGTTCTTGAAGccc < 7:348726/148‑1 (MQ=255) ccgatgc‑cgCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAACGTTCTTGAAGccc < 8:108645/148‑1 (MQ=255) gatgcgcgccCAAGGGCG‑GCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAACGTTCTTGAAGCCCATc > 5:135151/7‑149 (MQ=255) gatgc‑cgCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAACGTTCTTGAAGCCCATc > 1:108739/1‑149 (MQ=255) gatgc‑cgCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAACGTTCTTGAAGCCCATc < 8:117640/149‑1 (MQ=255) gc‑cgccCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAACGTTCTTGAAGCCCATCTTg > 5:18634/1‑149 (MQ=255) cgcgccCAAGGGCG‑GCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAACGTTCTTGAAGCCCATCTTGt < 6:309267/147‑1 (MQ=255) c‑cgccCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAACGTTCTTGAAGCCCATCTTGt < 3:224314/149‑1 (MQ=255) cgccCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGCAATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAACGTTCTTGAAGCCCATCTTg > 1:271818/1‑148 (MQ=255) cgccCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAACGTTCTTGAAGCCCATCTTGTa < 7:33096/149‑1 (MQ=255) cgccCAAGGGCG‑GCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAACGTTCTTGAAGCCCATCTTGTaa < 3:71182/149‑1 (MQ=255) gccCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAACGTTCTTGAAGCCCATCTTGTaa > 1:175879/1‑149 (MQ=255) cTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAAc > 1:147581/1‑124 (MQ=255) ttGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAACGTTCTTGAAGCCCATCTTGTAACCt > 6:2932/1‑148 (MQ=255) | CAAGCCGCGCCGCGCCCGCCGGGGCGACAATGGCAAAACATGCGTTGGCCGGCAGCGCGGCTGGCAGGGTGGGTTGGAAGGTTTTGGCGCAGTACATCGCGGCTCCTTGCAGCGCATTGGACACAAACAAAAATGCCGATGC‑CGCCCTTGGGCGCGCATCGGCATCTGTGGCTCCGCTCTAGGCTAGAGC‑ATAGCTCAGAGCTTGATCTTGGCTTCGTGGGCCTGCTGGTCGGCGTGGTACGAAGAACGCACCAGCGGGCCAGAAGCAACGTTCTTGAAGCCCATCTTGTAACCT > NC_002947/5463253‑5463547 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |