Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,762,502 | G→A | 11.5% | intergenic (+18/‑123) | gpmI → / → PP_5057 | 2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase/M23/M37 family peptidase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,762,502 | 0 | G | A | 11.5% | 134.6 / 7.5 | 53 | intergenic (+18/‑123) | gpmI/PP_5057 | 2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase/M23/M37 family peptidase |
Reads supporting (aligned to +/- strand): ref base G (19/27); new base A (3/3); total (22/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.89e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.35e-01 |
ACGTGGGCAAGCGCAACGTGAAAGTGCGCGAGGGCGGCGTGCTGGCCGACGTGGCGCCAACCATGCTGAAGCTGCTGGGGCTGG‑AAAAGCCGGTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAGGCCAGTCTCCATCCTTGGTACGCCAAACCCCATGCTTCGCGCCCTGATCCTC > NC_002947/5762354‑5762645 | aCGTGGGCAAGCGCAACGTGAAAGTGCGCGAGGGCGGCGTGCTGGCCGACGTGGCGCCAACCATGCTGAAGCTGCTGGGGCTGG‑AAAAGCCGGTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCg > 2:276383/1‑149 (MQ=255) ggCAAGCGCAACGTGAAAGTGCGCGAGGGCGGCGTGCTGGCCGACGTGGCGCCAACCATGCTGAAGCTGCTGGGGCTGG‑AAAAGCCGGTGGAAATGACCCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTg < 1:276383/148‑1 (MQ=255) gcgcAACGTGAAAGTGCGCGAGGGCGGCGTGCTGGCCGACGTGGCGCCAACCATGCTGAAGCTGCTGGGGCTGG‑AAAAGCCGGTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGcccc < 4:356709/149‑1 (MQ=255) aaCGTGAAAGTGCGCGAGGGCGGCGTGCTGGCCGACGTGGCGCCAACCATGCTGAAGCTGCTGGGGCTGG‑AAAAGCCGGTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAAtt < 5:38912/149‑1 (MQ=255) gTGAAAGGGCGCGAGGGCGGCGTGCTGGCCGACGTGGCGCCAACCATGCTGAAGGTGCTGGGGCTGG‑AAAATGCGGTTGAAATGA‑CCGGTACCTCGATTCTGGGCGACGCCTGAATGTCGAAAGGGGATGCGTTGCAGCCCCAATTGca < 3:49179/149‑1 (MQ=255) aaaGTGCGCGAGGGCGGCGTGCTGGCCGACGTGGCGCCAACCATGCTGAAGCTGCTGGGGCTGG‑AAAAGCCGGTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACAt < 4:17593/149‑1 (MQ=255) cggAGTGCGGCGTGCTGGCCGACGTGGCGCCAACCATGCTGAAGCTGCTGGGGCTGG‑AAAAGCCGGTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGATTGGGGCTGCTTTGCAGCCCCAATTGCACATGAATTcc < 4:269411/147‑1 (MQ=255) cagcgTGCTGGCCGACGTGGCGCCAACCATGCTGAAGCTGCTGGGGCTGG‑AAAAGCCGGTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACaaa < 4:223588/147‑1 (MQ=255) gCTGGCCGACGTGGCGCCAACCATGCTGAAGCTGCTGGGGCTGG‑AAAAGCCGGTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTcc > 8:190583/1‑136 (MQ=255) gCTGGCCGACGTGGCGCCAACCATGCTGAAGCTGCTGGGGCTGG‑AAAAGCCGGTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTcc < 7:190583/136‑1 (MQ=255) ggCCGACGTGGCGCCAACCATGCTGAAGCTGCTGGGGCTGG‑AAAAGCCGGTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCt > 2:317884/1‑149 (MQ=255) gcCAACCATGCTGAAGCTGCTGGGGCTGG‑AAAAGCCGGTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGc > 6:32872/1‑148 (MQ=255) gcCAACCATGCTGAAGCTGCTGGGGCTGG‑AAAAGCCGGTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGc > 3:128813/1‑148 (MQ=255) cAACCATGCTGAAGCTGCTGGGGCTGG‑AAAAGCCGGTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAg < 8:191397/149‑1 (MQ=255) cATGCTGAAGCTGCTGGGGCTGGAAAAAGCCGGTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCg > 1:191547/1‑149 (MQ=255) gCTGAAGCTGCTGGGGCTGG‑AAAAGCCGGTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGtttt > 6:153646/1‑149 (MQ=255) aaGCTGCTGGGGCTGG‑AAAAGCCGGTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGtttttttt < 2:27142/149‑1 (MQ=255) aaGCTGCTGGGGCTGG‑AAAAGCCGGTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGtttttttt > 1:284644/1‑149 (MQ=255) aGCTGCTGTGGCTGG‑AAAAGCCGGTGGAAATGA‑CCGTTACCTCGATTCTGTTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGtttttttt < 3:45772/148‑1 (MQ=255) aGCTGCTGGGGCTGG‑AAAAGCCGGTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTtg < 8:247404/149‑1 (MQ=255) aGCTGCTGGGGCTGG‑AAAAGCCGGTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTtg < 1:317884/149‑1 (MQ=255) gctgctGGGGCTGG‑AAAAGCCGGTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTtgc < 5:153646/149‑1 (MQ=255) gg‑AAAAGCCGGTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCg > 5:197146/1‑117 (MQ=255) gg‑AAAAGCCGGTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCg < 6:197146/117‑1 (MQ=255) aaaGCCGGTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCa > 1:5255/1‑149 (MQ=255) ggTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGc > 8:242683/1‑138 (MQ=255) ggTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGc < 7:242683/138‑1 (MQ=255) ggTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAg < 2:284644/149‑1 (MQ=255) gTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAgg > 5:114117/1‑149 (MQ=255) tGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAGGc < 4:128813/149‑1 (MQ=255) cGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAGGCCAGtct < 7:320265/145‑1 (MQ=255) cGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAGGCCAGtct > 8:320265/1‑145 (MQ=255) tACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAGGCCAGTCTCCATCCt < 1:199633/149‑1 (MQ=255) cTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCCGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATACGCACAGAGGCGTTTTTTTTTCCTGCCCCGGCCGGCATACTAGGGCAGTGTCCATACTTgg > 6:42614/1‑149 (MQ=255) cTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAGGCCAGTCTCCATCCTTgg > 2:195963/1‑149 (MQ=255) cTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAGGCCAGTCTCCATCCTTgg > 2:190065/1‑149 (MQ=255) tCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAGGCCAGTCTCCATCCTTgg > 5:356786/1‑148 (MQ=255) aTTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAGGCCAGTCTCCATCCTTGGTACg > 6:23763/1‑149 (MQ=255) cGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAGGCCAGTCTCCATCCTTGGTACGCCAAACCCCAt < 5:32872/149‑1 (MQ=255) cGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAGGCCAGTCTCCATCCTTGGTACGCCAAACCCCAt < 1:190065/149‑1 (MQ=255) cGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAGGCCAGTCTCCATCCTTGGTACGCCAAACCCCAt < 1:195963/149‑1 (MQ=255) gAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAGGCCAGTCTCCAt > 5:186168/1‑123 (MQ=255) gAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAGGCCAGTCTCCAt < 6:186168/123‑1 (MQ=255) tCGATAGGCGCGGCGTTGCAGCCCCAATTGCACAAGAATTCCAGACAAACGCCCCCCTGCTTCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAGGCCAGTCTCCATCCTTGGTACGCCAAACCCCATGCTTCgcgc < 8:158126/148‑1 (MQ=255) caattggggCTGCAACGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAGGCCAGTCTCCATCCTTGGTACGCCAAACCCCATGCTTCGCGccc > 2:235151/6‑149 (MQ=255) caattggggCTGCAACGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAGGCCAGTCTCCATCCTTGGTACGCCAAACCCCATGCTTCGCGccc < 1:235151/144‑1 (MQ=255) gAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAGGCCAGTCTCCATCCTTGGTACGCCAAACCCCATGCTTCGCGccc < 1:70016/148‑1 (MQ=255) ttggggCTGCAACGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAGGCCAGTCTCCATCCTTGGTACGCCaa < 1:47953/126‑1 (MQ=255) ttggggCTGCAACGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAGGCCAGTCTCCATCCTTGGTACGCCaa > 2:47953/3‑128 (MQ=255) tggggCTGCAACGCAGCCCCTATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGttt > 6:380198/2‑73 (MQ=38) tggggCTGCAACGCAGCCCCTATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGttt < 5:380198/72‑1 (MQ=38) gCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAGGCCAGTCTCCATCCTTGGTACGCCAAACCCCATGCTTCGCGCCCTGAtcctc < 2:5255/149‑1 (MQ=255) cTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAGGCCAGTCTCCATCCTTGGTACGCCAAACCCCATGCTTCGCGCCCTGAtcctc > 6:211673/1‑148 (MQ=255) cTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAGGCCAGTCTCCATCCTTGGTACGCCAAACCCCATGCTTCGCGCCCTGAtcctc < 5:211673/148‑1 (MQ=255) | ACGTGGGCAAGCGCAACGTGAAAGTGCGCGAGGGCGGCGTGCTGGCCGACGTGGCGCCAACCATGCTGAAGCTGCTGGGGCTGG‑AAAAGCCGGTGGAAATGA‑CCGGTACCTCGATTCTGGTCGACGCCTGAATGTCGAAAGGGGCTGCGTTGCAGCCCCAATTGCACATGAATTCCAGACAAACGCCCCCCTGCATCCGCAGCGAGGCGTTTTTTTTGCCTGCCCAGGCGGGCATACTAGGCCAGTCTCCATCCTTGGTACGCCAAACCCCATGCTTCGCGCCCTGATCCTC > NC_002947/5762354‑5762645 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |