| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,966,125 | A→T | 6.8% | intergenic (‑194/+236) | PP_5232 ← / ← amtB | hypothetical protein/ammonium transporter AmtB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,966,125 | 0 | A | T | 6.8% | 196.4 / 2.6 | 69 | intergenic (‑194/+236) | PP_5232/amtB | hypothetical protein/ammonium transporter AmtB |
| Reads supporting (aligned to +/- strand): ref base A (33/31); new base T (2/3); total (35/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.73e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.77e-01 | |||||||||||
CAGCCGTAGACCGGCAGCCACCAGTGAAAATTCAACTGGCCGTGGGTTAGGCCACTGCCCTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATAAACGCCCTGCGGCTTGTAAGTTTTTTACCTACGTCACGAACGTG > NC_002947/5965978‑5966273 | cAGCCGTAGACCGGCAGCCACCAGTGAAAATTCAACTGGCCGTGGGTTAGGCCACTGCCCTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACTTGACAAATCCATTAGCCCCTGCTGGCCacac < 1:39779/149‑1 (MQ=255)cAGCCGTAGACCGGCAGCCACCAGTGAAAATTCAACTGGCCGTGGGTTAGGCCACTGCCCTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCacac > 2:62655/1‑149 (MQ=255) aGCCGTAGACCGGCAGCCACCAGTGAAAATTCAACTGGCCGTGGGTTAGGCCACTGCCCTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACg > 2:214417/1‑149 (MQ=255) gTAGACCGGCAGCCACCAGTGAAAATTCAACTGGCCGTGGGTTAGGCCACTGCCCTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTAt > 1:156455/1‑149 (MQ=255) tAGACCGGCAGCCACCAGTGAAAATTCAACTGGCCGTGGGTTAGGCCACTGCCCTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTAtt < 6:48984/149‑1 (MQ=255) aaaTTCAACTGGCCGTGGGTTAGGCCACTGCCCTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTg < 4:178893/148‑1 (MQ=255) aaTTCAACTGGCCGTGGGTTAGGCCACTGCCCTTGGGTCGGCACTCCTGATGTGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGc > 6:239152/1‑149 (MQ=255) aTTCAACTGGCCGTGGGTTAGGCCACTGCCCTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAgg < 1:129257/143‑1 (MQ=255) aTTCAACTGGCCGTGGGTTAGGCCACTGCCCTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAgg > 2:129257/1‑143 (MQ=255) gCCGTGGGTTAGGCCACTGCCCTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAgtgtgt < 2:261824/148‑1 (MQ=255) gCCGTGGGTTAGGCCACTGCCCTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGtgtgtg < 6:147284/149‑1 (MQ=255) gCCGTGGGTTAGGCCACTGCCCTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGtgtgtg < 5:363980/149‑1 (MQ=255) gCCGTGGGTTAGGCCACTGCCCTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGtgtgtg < 2:367840/149‑1 (MQ=255) gCCGTGGGTTAGGCCACTGCCCTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGtgtgtg < 2:156455/149‑1 (MQ=255) ttAGGCCACTGCCCTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTc < 3:161262/149‑1 (MQ=255) aGGCCACTGCCCTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCg < 8:48094/148‑1 (MQ=255) cACTGCCCTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCaaa > 5:287034/1‑149 (MQ=255) aCTGCCCTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGCCCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGAGGACTAGTCAAac > 7:348162/1‑149 (MQ=255) aCTGCCCTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCaaa > 2:131516/1‑148 (MQ=255) cTGCCCTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAaca > 7:146017/1‑149 (MQ=255) tGCCCTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCCGCTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCaaa > 1:266495/1‑116 (MQ=255) tGCCCTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCaaa < 2:266495/115‑1 (MQ=255) cccTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACAccc > 4:15334/1‑149 (MQ=255) ccTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCt > 7:323547/1‑149 (MQ=255) cTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAaca < 8:165462/144‑1 (MQ=255) cTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGATGGCGAAGTGTGTGGACTACTCGTCAAaca > 7:165462/1‑144 (MQ=255) tCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGgcgc > 1:41471/1‑149 (MQ=255) ggCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGacta < 2:128075/125‑1 (MQ=255) cTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTc < 2:126043/149‑1 (MQ=255) tCCTGATTGGAGGCGGCAACCAGCAGGCC‑CTGCTCCTTGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTTGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGgcgc < 5:311149/142‑1 (MQ=255) tCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTc > 7:309107/1‑148 (MQ=255) cTGATGGGAGGCTGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCt < 7:304008/147‑1 (MQ=255) tGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGt > 5:376512/1‑122 (MQ=255) tGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGt < 6:376512/122‑1 (MQ=255) gATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGATGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAgcg > 6:52717/1‑149 (MQ=255) aTGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAgcgc > 2:77492/1‑149 (MQ=255) aTGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAgcgc > 5:260790/1‑149 (MQ=255) gcACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGa > 5:332665/1‑148 (MQ=255) aCCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGaaa > 3:223548/1‑148 (MQ=255) cccAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGaaaaa < 6:332665/149‑1 (MQ=255) ccAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAaaag < 8:309107/149‑1 (MQ=255) ccAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAaaag < 8:323547/149‑1 (MQ=255) cagGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAaaagcaaa < 5:239152/149‑1 (MQ=255) ggCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAaaagcaaag > 2:235580/1‑148 (MQ=255) c‑cTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCAc > 4:217786/1‑148 (MQ=255) cTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCAt < 6:158271/147‑1 (MQ=255) cTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATaa < 6:239111/149‑1 (MQ=255) tGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACTCGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAgc < 1:117119/116‑1 (MQ=255) tGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACTCGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAgc < 1:112691/116‑1 (MQ=255) tGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACTCGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAgc > 2:117119/1‑116 (MQ=255) tGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACTCGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAgc > 2:112691/1‑116 (MQ=255) gCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATAAACGccc > 3:215338/1‑149 (MQ=255) gCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATAAACGcc < 1:77492/148‑1 (MQ=255) gCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATAAACGc < 4:223548/147‑1 (MQ=255) aCAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATAAACGCCCTGCGGCtt < 4:215338/147‑1 (MQ=255) aCAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATAAACGCCCTGCGGCTTg > 1:22878/1‑148 (MQ=255) aaaTCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTGTAGCGCGCCCGTGGAAAAAGCAAAGCACCATAAACGCCCTGCGGCTTGTaa < 6:287034/149‑1 (MQ=255) aaaTCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATAAACGCCCTGCGGCTTGt > 5:47866/1‑147 (MQ=255) aaaTCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACACTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATAAACGCCCTGCGGCTTGt > 3:344878/1‑147 (MQ=255) aaTCCATTAGCCCCTGCTGGCCACTCGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATAAACGCCCTGCGGCTTGTAAg < 6:260790/149‑1 (MQ=255) aaTCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATAAACGCCCTGCGGCTTGTAAg > 2:257323/1‑149 (MQ=255) tCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATAAACGCCCTGCGGCTTGTAAGtt > 4:17866/1‑149 (MQ=255) tCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATAAACGCCCTGCGGCTTGTAAGtt > 4:136850/1‑149 (MQ=255) cATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTa < 4:135506/95‑1 (MQ=255) cATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTa > 3:135506/1‑95 (MQ=255) aTTAGCCCCCGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGATGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATAAACGCCCTGCGGCTTGTaggagttt > 8:327140/1‑142 (MQ=255) ttAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATAAACGCCCTGCGGCTTGTAAGtttttt < 8:146017/149‑1 (MQ=255) gCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATa < 1:117175/120‑1 (MQ=255) gCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATa > 2:117175/1‑120 (MQ=255) cccTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATAAACGCCCTGCGGCTTGTAAGTTTTTTACCTa > 5:246140/1‑149 (MQ=255) ccTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATAAACGCCCTGCGGCTTGTAAGTTTTTTACCTAc < 2:22878/149‑1 (MQ=255) cacaCGCTATTGGCAAGCCTAGCAAAGTCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATAAACTCCCTGCGGCTTGTAAGTTTTTTACCTACGTCACGAAc < 3:136850/149‑1 (MQ=255) cacaCGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATAAACGCCCTGCGGCTTGTAAGTTTTTTACCTACGTCACGAAc < 1:14525/149‑1 (MQ=255) acacGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATAAACGCCCTGCGGCTTGTAAGTTTTTTACCTACGTCACGAACg > 6:189134/1‑149 (MQ=255) acacGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATAAACGCCCTGCGGCTTGTAAGTTTTTTACCAACGTCACGAACg > 7:147/1‑149 (MQ=255) cacGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATAAACGCCCTGCGGCTTGTAAGTTTTTTACCTACGTCACGAACgt < 5:52717/149‑1 (MQ=255) cacGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGACCGTGGAAAAAGCAAAGCACCATAAACGCCCTGAGCCTTGTAAGTTTTTTACATACGTCACGAACgt > 4:34958/1‑149 (MQ=255) acGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATAAACGCCCTGCGGCTTGTAAGTTTTTTACCTACGTCACGAACgtg < 3:17866/149‑1 (MQ=255) | CAGCCGTAGACCGGCAGCCACCAGTGAAAATTCAACTGGCCGTGGGTTAGGCCACTGCCCTTGGGTCGGCACTCCTGATGGGAGGCGGCACCCAGCAGGCC‑CTGCTCCTGGCAGGACCTGACAAATCCATTAGCCCCTGCTGGCCACACGCTATTGGCAAGCCTAGCAAAGGCTGGCGAAGTGTGTGGACTACTCGTCAAACACCCTTCGGCGCGCATTCTAGCGCGCCCGTGGAAAAAGCAAAGCACCATAAACGCCCTGCGGCTTGTAAGTTTTTTACCTACGTCACGAACGTG > NC_002947/5965978‑5966273 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |