| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,974,648 | C→A | 5.7% | intergenic (+960/‑133) | PP_5726 → / → PP_5727 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,974,648 | 0 | C | A | 5.7% | 279.0 / 4.5 | 87 | intergenic (+960/‑133) | PP_5726/PP_5727 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (37/45); new base A (3/2); total (40/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.58e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.16e-01 | |||||||||||
AATGCACTGAAATAATAACCGTGAATTATGCAATATGCTTCGCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAGGGTTATCTTTTGTTTGATAGAAGGCTATTAAAGAATGCGAGACCTATC > NC_002947/5974500‑5974794 | aaTGCACTGAAATAATAACCGTGAATTATGCAATATGCTTCGCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGc < 2:207970/149‑1 (MQ=255) tGCACTGAAATAATAACCGTGAATTATGCAATATGCTTCGCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGa < 3:241884/149‑1 (MQ=255) tGCACTGAAATAATAACCGTGAATTATGCAATATGCTTCGCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGa > 3:13176/1‑149 (MQ=255) tGCACTGAAATAATAACCGTGAATTATGCAATATGCTTCGCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGa < 3:11473/149‑1 (MQ=255) aCTGAAATAATAACCGTGAATTATGCAATATGCTTCGCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGAGATAAACAATCTAAAACAACCA‑TTTTTAATGAGCGaaaa > 5:320814/1‑146 (MQ=255) cTGAAATAATAACCGTGAATTATGCAATATGCTTCGCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCAc > 5:125980/1‑149 (MQ=255) aataatAACCGTGAATTATGCAATATGCTTCGCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCa < 6:125980/148‑1 (MQ=255) aaCCGTGAATTATGCAATATGCTTCGCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑Tc < 6:234003/149‑1 (MQ=255) aCCGTGAATTATGCAATATGCTTCGCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑Tcc < 4:136081/149‑1 (MQ=255) cGTGAATTATGCAATATGCTTCGCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑gg < 4:347267/149‑1 (MQ=255) cGTGAATTATGCAATATGCTTCGCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATAACCCAGCCCT‑TCC‑gg > 1:279352/1‑149 (MQ=255) gTGAATTATGCAATATGCTTCGCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑ggg > 3:42399/1‑149 (MQ=255) tGCAATATGCTTCGCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑Tg > 1:327777/1‑149 (MQ=255) gCAATATGCTTCGCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGt > 2:285423/1‑149 (MQ=255) cAATATGCTTCGCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAACTGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTc < 3:248193/149‑1 (MQ=255) cAATATGCTTCGCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGt < 4:202354/148‑1 (MQ=255) cAATATGCTTCGCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTc > 5:99618/1‑149 (MQ=255) aaTATGCTTCGCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTgc > 2:21420/1‑142 (MQ=255) aaTATGCTTCGCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTgc < 1:21420/142‑1 (MQ=255) aaTATGCTTCGCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCT‑AAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCg < 3:56158/148‑1 (MQ=255) atatGCTTCGCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCg > 8:179113/1‑148 (MQ=255) tGCTTCGCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGcaca < 6:99618/149‑1 (MQ=255) ttCGCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCAACCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACagaa > 7:165876/1‑149 (MQ=255) gCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACagaaga < 2:327777/148‑1 (MQ=255) gCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACagaaga < 8:22411/148‑1 (MQ=255) gCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACagaaga < 1:120957/148‑1 (MQ=255) gCCACACTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCATTTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACagaaga < 7:217539/149‑1 (MQ=255) ccACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACagaa > 4:230861/1‑145 (MQ=255) ccACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACagaa < 3:230861/145‑1 (MQ=255) cACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGt > 1:185239/1‑148 (MQ=255) cACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGt < 2:185239/148‑1 (MQ=255) cccTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGaa < 4:13176/149‑1 (MQ=255) tataAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAAACTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATTAGCGATCACCCAGCCCT‑TCC‑GGGCTGCTC‑TGTCGCACAGAAGAGTGAacac > 3:119889/1‑149 (MQ=255) taAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACtt < 8:165876/149‑1 (MQ=255) aTGGTTGTTCACTGTCCTGCATATCAAATTTAAATGCAACCTACAGTACCTGTTCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCACT‑TCC‑GGGATGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCAtt < 4:119889/149‑1 (MQ=255) aTGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCAtt > 3:322227/1‑149 (MQ=255) gttCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATccc > 4:308300/1‑149 (MQ=255) tGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCa > 1:25877/1‑135 (MQ=255) tGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCa < 2:25877/135‑1 (MQ=255) gCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCt > 5:111375/1‑149 (MQ=255) cTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTCCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGATGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGt > 6:230561/1‑149 (MQ=255) aTCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTc > 6:272047/1‑149 (MQ=255) tCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTc < 7:266419/148‑1 (MQ=255) tCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCg > 1:126832/1‑149 (MQ=255) tCAAATTTAAAAGCAACCTTCAGTACCTGCGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTCAACACTTCGCCGCCATAGATCCCGCGCGCCTGTTTTTTCg < 2:279352/149‑1 (MQ=39) aaaTTTAAATGCAAACTACACTAACTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGCATGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCg < 1:285423/148‑1 (MQ=38) aaTTTAAATGCAACCTACAGTACCTGTGCTAATAACAATCTAAAACCACCA‑TTTTTAATTAGCGATCACCCAGCCCTCTCCTGGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGc < 1:299739/149‑1 (MQ=38) aaTTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGc > 4:11461/1‑147 (MQ=255) aTTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGaa < 7:179893/107‑1 (MQ=255) aTTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGaa > 8:179893/1‑107 (MQ=255) aaCCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACa > 5:302431/1‑147 (MQ=255) aaCCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACa > 2:187453/1‑147 (MQ=255) aCCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACagag > 1:69371/1‑149 (MQ=255) ccTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAgg < 4:42399/149‑1 (MQ=255) ccTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAgg < 2:69371/149‑1 (MQ=255) tACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAGGGt > 1:237596/1‑149 (MQ=255) aCAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAggg > 7:51161/1‑147 (MQ=255) aCAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAggg < 8:51161/147‑1 (MQ=255) cAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAGGGTTa > 8:54645/1‑149 (MQ=255) aGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGt > 4:36305/1‑121 (MQ=255) aGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGt < 3:36305/121‑1 (MQ=255) gTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAGGGTTATc > 8:66701/1‑149 (MQ=255) ccTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAGGGTTATCttt < 5:134292/149‑1 (MQ=255) cTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAGGGTTATCtttt < 1:187453/149‑1 (MQ=255) tgCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAGGGtt < 3:219222/139‑1 (MQ=255) tgCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAGGGtt > 4:219222/1‑139 (MQ=255) tgCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAGGGTTATCTtttgtt < 5:272047/149‑1 (MQ=255) gAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCAT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAGGGTTATCTTTTGTTTGa > 1:367331/1‑149 (MQ=255) aTAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAGGGTTATCTTTTGTTTGATa < 2:126832/149‑1 (MQ=255) aCAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAGGGTTATCTTTTGTTTGATAGaa < 7:179113/149‑1 (MQ=255) aaTCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAGGGTTATCTTTTGTTTGATAGAAgg > 3:364020/1‑149 (MQ=255) tAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAGGGTTATCTTTTGTTTGATAGAAGGCTAt > 3:360506/1‑149 (MQ=255) aaaCCACCA‑TTTTTAATGACCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTATCGCTAGAACGAACAGAGGGTTATCTTTTGTTTGATAGAAGGCTAt < 2:140182/147‑1 (MQ=255) accaccA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAGGGTTATCTTTTGTTTGATAGAAGGCTATTaaa < 6:302431/149‑1 (MQ=255) accaccA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAGGGTTATCTTTTGTTTGATAGAAGGCTATTaaa < 3:11461/149‑1 (MQ=255) ca‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAGGGTTATCTTTTGTTTGATAGAAGGCTATTAAAGAATg < 6:111375/149‑1 (MQ=255) ttgtttgatGAGAGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGcaaacaggatgcgcatgacgtcagatctgcactgacatcgagatctagaaaagcattcggcggctgacctacccggatcagtcggcgaatgcttttcta > 1:132025‑M2/4‑49 (MQ=255) tttttAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAGGGTTATCTTTTGTTTGATAGAAGGCTATTAAAGAATGCg < 7:66701/149‑1 (MQ=255) ttttAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAGGGTTATCTTTTGTTTGATAGAAGGCTATTAAAGAATGc > 5:346670/1‑147 (MQ=255) tttGATGAGAGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGcaaacaggatgcgcatgacgtcagatctgcactgacatcgagatctagaaaagtattcggcggctgacctacccggatcagtcggcgaatgcttttctagatc < 7:217535‑M2/149‑104 (MQ=255) tttGATGAGAGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGcaaacaggatgcgcatgacgtcagatctgcactgacatcgagatctagaaaagtattcggcggctgacctacccggatcagtcggcgaatgcttttctagatc < 7:211825‑M2/149‑104 (MQ=255) aaTGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAGGGTTATCTTTTGTTTGATAGAAGGCTATTAAAGAATGCGAGAc < 4:364020/148‑1 (MQ=255) aTGAGAGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGcaaacaggatgcgcatgacgtcagatctgcactgacatcgagatctagaaaagtattcggcggctgacctacccggatcagtcggcgaatgcttttctagatctcg > 8:211825‑M2/1‑42 (MQ=255) aTGAGAGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGcaaacaggatgcgcatgacgtcagatctgcactgacatcgagatctagaaaagtattcggcggctgacctacccggatcagtcggcgaatgcttttctagatctcg > 8:217535‑M2/1‑42 (MQ=255) gAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAGGGTTATCTTTTGTTTGATAGAAGGCTATTAAAGAATGCGAGACCTa > 8:141062/1‑148 (MQ=255) aGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAGGGTTATCTTTTGTTTGATAGAAGGCTATTAAAGAATGCGAGACCTAt < 4:322227/148‑1 (MQ=255) aGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAGGGTTATCTTTTGTTTGATAGAAGGCTATTAAAGAATGCGAGACCTATc < 4:360506/149‑1 (MQ=255) gCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAGGGTTATCTTTTGTTTGATAGAAGGCTATTAAAGAATGCGAGACCTATc < 7:141062/148‑1 (MQ=255) | AATGCACTGAAATAATAACCGTGAATTATGCAATATGCTTCGCCACCCTATAAGAGTAGGATGGTTGTTCACTGGCCTGCAGATCAAATTTAAATGCAACCTACAGTACCTGTGCGAATAACAATCTAAAACCACCA‑TTTTTAATGAGCGATCACCCAGCCCT‑TCC‑GGGCTGCGC‑TGTCGCACAGAAGAGTGAACACTTCGCCGCCATTGATCCCGCGCGCCTGTTTTTTCGCTAGAACGAACAGAGGGTTATCTTTTGTTTGATAGAAGGCTATTAAAGAATGCGAGACCTATC > NC_002947/5974500‑5974794 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |