Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,090,799 | G→A | 6.9% | Q230* (CAG→TAG) | PP_5342 ← | GntR family transcriptional regulator |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,090,799 | 0 | G | A | 6.9% | 169.1 / 2.1 | 58 | Q230* (CAG→TAG) | PP_5342 | GntR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base G (31/23); new base A (2/2); total (33/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.24e-01 |
TCGGCAATCGGTCAACTGTTCCAGCCGGCCGCAGTCCAGCCCGTCTTCATCCACAGGCACGCCACACACCCGGCCACCCGCGAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCCGCGAGCGGCGTAGATAGGCCGCTATCAGATCGCGCAAAGCCGGCTCGCCAGCGGGGTC > NC_002947/6090653‑6090940 | tCGGCAATCGGTCAACTGTTCCAGCCGGCCGCAGTCCAGCCCGTCTTCATCCACAGGCACGCCACACACCCGGCCACCCGCGAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTg > 2:67481/1‑147 (MQ=255) tCGGCAATCGGTCAACTGTTCCAGCCGGCCGCAGTCCAGCCCGTCTTCATCCACAGGCACGCCACACACCCGGCCACCCGCGAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTg > 4:221338/1‑147 (MQ=255) gTCAACTGTTCCAGCCGGCCGAAGTCCAGCCCGTCTTCATCCACAGGCACGCCACACACCCGGCCACCCGCGAGCGTGATGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCAAAGCCACACCCTCGCCCGGCTGCAGCAGCAACtc > 4:194069/1‑148 (MQ=255) tCAACTGTTCCAGCCGGCCGCAGTCCAGCCCGTCTTCATCCACAGGCACGCCACACACCCGGCCACCCGCGAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACtgt < 3:221338/149‑1 (MQ=255) tCAACTGTTCCAGCCGGCCGCAGTACAGCCCGTCTTCATCCACAGGCACGCCACAAACACGGCCACCAGCGAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCTCCCGGCTGCAGCAGAAACtgt > 1:364414/1‑149 (MQ=255) ttCCAGCCGGCCGCAGTCCAGCCCGTCTTCATCCACAGGCACGCCACACACCCGGCCACCCGCGAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGcaca > 7:34605/1‑147 (MQ=255) aGCCGGCCGCAGTCCAGCCCGTCTTCATCCACAGGCACGCCACACACCCGGCCACCCGCGAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACtg > 8:222089/1‑137 (MQ=255) aGCCGGCCGCAGTCCAGCCCGTCTTCATCCACAGGCACGCCACACACCCGGCCACCCGCGAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACtg < 7:222089/137‑1 (MQ=255) aGCCGGCCGCAGTCCAGCCCGTCTTCATCCACAGGCACGCCACACACCCGGCCACCCGCGAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCt > 4:65682/1‑149 (MQ=255) ccggccgCAGTCCAGCCCGTCTTCATCCACAGGCACGCCACACACCCGGCCACCCGCGAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGa > 3:355514/1‑149 (MQ=255) cAGTCCAGCCCGTCTTCATCCACAGGCACGCCACACACCCGGCCACCCGCGAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCctg < 4:355514/149‑1 (MQ=255) gTCCAGCCCGTCTTCATCCACAGGAACGCCACACACCCGGCCACCCGCGAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCctgct > 7:55518/1‑149 (MQ=255) gTCCAGCCAGTCTTCATCCAGAGGCACGCCAGACACCCGGCCACCCGCGAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCGCGGCTGCAGCAGCATCTGTGCACAAAGGCTGATGGCctgct < 3:194069/149‑1 (MQ=255) gCCCGTCTTCATCCACAGGCACGCCACACACCCGGCCACCCGCGAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCtgctgc < 7:231867/146‑1 (MQ=255) gCCCGTCTTCATCCACAGGCACGCCACACACCCGGCCACCCGCGAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCtgctgc > 8:231867/1‑146 (MQ=255) cGTCTTCATCCACAGGCACGCCACACACCCGGCCACCCGCGAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCg > 6:64504/1‑149 (MQ=255) cGTCTTCATCCACAGGCACGCCACACACCCGGCCACCCGCGAGAGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCg > 6:65759/1‑149 (MQ=255) ggCACGCCACACACCCGGCCACCCGCGAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAAt < 5:65759/149‑1 (MQ=255) ccACACACCCGGCCACCCGCGAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTc < 5:64504/149‑1 (MQ=255) ccACACACCCGGCCACCCGCGAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTc < 1:67481/149‑1 (MQ=255) cacacCCGGCCACCCGCTAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGc < 2:364414/149‑1 (MQ=255) cccGGCCACCCGCGAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTa < 8:34605/149‑1 (MQ=255) ccGGCCACCCGCGAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGtc > 5:12133/1‑147 (MQ=255) ccGGCCACCCGCGAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTAc < 3:207855/149‑1 (MQ=255) aCCCGCGAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAGGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCt > 4:286931/1‑147 (MQ=255) ccGCGAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGc < 8:55518/149‑1 (MQ=255) gTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCCGCGa > 7:197752/1‑149 (MQ=255) gTGAAGGCATGAGCGGCCGCCAGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCAGCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCagc > 7:159831/1‑147 (MQ=255) gAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCCGCGAgc > 3:338039/1‑149 (MQ=255) aaGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAg > 6:134474/1‑124 (MQ=255) aaGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAg < 5:134474/124‑1 (MQ=255) aTGAGCGGCCGCCCGATAGCCTGGGTGTTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCCGCGAgcggcg > 1:190960/1‑148 (MQ=255) cgccCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCCGCGAGCGGCGTAGATAGGCCg > 6:133847/1‑149 (MQ=255) cgccCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCCGCGAGCGGCGTAGATAGGCCg < 6:12133/149‑1 (MQ=255) cgccCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCCGCGAGCGGCGTAGATAGGCCg > 1:324966/1‑149 (MQ=255) ccGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAGGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCCGCGAGCGGCCTATCTACGCCGCtc < 3:286931/149‑2 (MQ=255) ccGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCCGCGAGCGGCGTAGATAGGCCGCTa > 1:12581/1‑149 (MQ=255) ccGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCCGCGAGCGGCGTAGATAGGCCGCTa > 6:279080/1‑149 (MQ=255) cGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCCGCGAGCGGCGTAGATAGGCCGCTAt > 4:335605/1‑149 (MQ=255) gATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCCGCGAGCGGCGTAGATAGGCCGCTAt > 1:37027/1‑148 (MQ=255) aTAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTACAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTc > 2:269059/1‑102 (MQ=255) aTAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTACAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTc > 2:132905/1‑102 (MQ=255) aTAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTACAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTc < 1:269059/102‑1 (MQ=255) aTAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTACAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTc < 1:132905/102‑1 (MQ=255) cTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCa > 3:189031/1‑98 (MQ=255) cTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCa < 4:189031/98‑1 (MQ=255) cTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCCGCGAGCGGCGTAGATa < 1:122749/133‑1 (MQ=255) cTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCCGCGAGCGGCGTAGATa > 2:122749/1‑133 (MQ=255) cTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCCGCGAGCGGCGTAGATAGGCCGCTATCAGATcg < 3:65682/149‑1 (MQ=255) ccACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCCGCGAGCGGCGTAGATAGGCCGCTATCAGATCGCGCAAAGc < 2:190960/148‑1 (MQ=255) cacaGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCCGCGAGCGGCGTAGATAGGCCGCTATCAGATCGCGCAAAGCCg < 3:335605/149‑1 (MQ=255) acaGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCCGCGAGCGGCGTAGATAGGCCGCTATCAGATCGCGCAAAGCCgg > 1:68464/1‑149 (MQ=255) caGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCCGCGAGCGGCGTAGATAGGCCGCTATCAGATCGCGCAAAGCCGGc > 6:294229/1‑149 (MQ=255) gCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCCGCGAGCGGCGTAGATAGGCCGCTATCAGATCGCGCAAAGCCGGCTc > 5:367660/1‑149 (MQ=255) ccACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCCGCGAGCGGCGTAGATAGGCCGCTATCAGATCGCGCAAAGCCGGCTCg > 4:134181/1‑149 (MQ=255) cGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCCGCGAGCGGCGTAGATAGGCCGCTATCAGATCGCGCAAAGCCGGCTCGCCAGCg > 4:189477/1‑149 (MQ=255) gCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGAt < 7:203005/60‑1 (MQ=255) gCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGAt > 8:203005/1‑60 (MQ=255) gCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCCGCGAGCGGCGTAGATAGGCCGCTATCAGATCGCGCAAAGCCGGCTCGCCAGCGGGGt < 2:12581/149‑1 (MQ=255) cccGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCCGCGAGCGGCGTAGATAGGCCGCTATCAGATCGCGCAAAGCCGGCTCGCCAGCGGGGTc < 2:324966/149‑1 (MQ=255) | TCGGCAATCGGTCAACTGTTCCAGCCGGCCGCAGTCCAGCCCGTCTTCATCCACAGGCACGCCACACACCCGGCCACCCGCGAGCGTGAAGGCATGAGCGGCCGCCCGATAGCCTGGGT‑TTTCCACAGCCACACCGTCGCCCGGCTGCAGCAGCAACTGTGCACAAAGGCTGATGGCCTGCTGCGCACCGCTTGTGATCACAATTTGTTCAGCCGTACAGCTCAGCCCCCGCGAGCGGCGTAGATAGGCCGCTATCAGATCGCGCAAAGCCGGCTCGCCAGCGGGGTC > NC_002947/6090653‑6090940 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |