Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 583,397 | G→C | 10.2% | V421V (GTG→GTC) ‡ | selB → | selenocysteyl‑tRNA‑specific translation elongation factor |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 583,397 | 0 | G | C | 10.2% | 143.4 / 7.7 | 49 | V421V (GTG→GTC) ‡ | selB | selenocysteyl‑tRNA‑specific translation elongation factor |
Reads supporting (aligned to +/- strand): ref base G (22/22); new base C (3/2); total (25/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.28e-01 |
GCTGCGCGATGCAGCGGATCTGGAGCAGGCACTGCCAGCACTGCTCGCCAGTGCACCGGGCGGCATTAGCCCGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGGCGCGCTTTCACGAGCAAGAGCCCGACCAGCTTGGCCCTGACCGTGATCGCTTGCGGCGCTTTGTAGCCTT > NC_002947/583256‑583543 | gctgcGCGATGCAGCGGATCTGGAGCAGGCACTGCCAGCACTGCTCGCCAGTGCACCGGGCGGCATTAGCCCGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCAccc < 2:153529/149‑1 (MQ=255) cgcgATGCAGCGGATCTGGAGCAGGCACTGCCAGCACTGCTCGCCAGTGCACCGGGCGGCATTAGCCCGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCgg < 3:259080/147‑1 (MQ=255) cAGCGGATCTGGAGCAGGCACTGCCAGCACTGCTCGCCAGTGCACCGGGCGGCATTAGCCCGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCaa < 5:132603/149‑1 (MQ=255) cAGCGGATCTGGAGCAGGCACTGCCAGCACTGCTCGCCAGTGCACCGGGCGGCATTAGCCCGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCa < 7:271915/148‑1 (MQ=255) ggATCTGGAGCAGGCACTGCCAGCACTGCTCGCCAGTGCACCGGGCGGCATTAGCCCGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAActgc > 1:173475/1‑149 (MQ=255) aGGCACTGCCAGCACTGCTCGCCAGTGCACCGGGCGGCATTAGCCCGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAAc > 2:3322/1‑149 (MQ=255) aCTGCCAGCACTGCTCGCCAGTGCACCGGGCGGCATTAGCCCGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGCCACCACCCgcac < 2:256883/123‑4 (MQ=255) aCTGCCAGCACTGCTCGCCAGTGCACCGGGCGGCATTAGCCCGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGCCACCACCCgcac > 1:256883/1‑120 (MQ=255) aGCACTGCTCGCCAGTGCACCGGGCGGCATTAGCCCGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGc > 5:113517/1‑141 (MQ=255) aGCACTGCTCGCCAGTGCACCGGGCGGCATTAGCCCGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGc < 6:113517/141‑1 (MQ=255) cACTGCTCGCCAGTGCACCGGGCGGCATTAGCCCGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAg < 7:122138/149‑1 (MQ=255) cTGCTCGCCAGTGCACCGGGCGGCATTAGCCCGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGgc > 3:11767/1‑149 (MQ=255) cTGCTCGCCAGTGCACCGGGCGGCATTAGCCCGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCAGGCAGTTGCCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGgc > 6:226480/1‑149 (MQ=255) gCCAGTGCACCGGGCGGCATTAGCCCGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTc > 7:166253/1‑147 (MQ=255) cAGTGCACCGGGCGGCATTAGCCCGTAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAag > 1:332837/1‑148 (MQ=255) aGTGCACCGGGCGGCATTAGCCCGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATgg < 6:201362/135‑1 (MQ=255) aGTGCACCGGGCGGCATTAGCCCGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATgg > 5:201362/1‑135 (MQ=255) aGTGCACCGGGCGGCATTAGCCCGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAag > 1:184065/1‑147 (MQ=255) gTGGACCGGGCGGGATTATCCCGCATCGACTCGAGCGGGATTTCAACCGCCTGGGGGAAACCTTGCATTTACCGGCTGATGTGCGGGTGGTGGCCACCCGGGATGGCCAACTGCTGTTTCGCCAACGCTCAATGGCAGGCGCTCAagca < 1:230363/149‑1 (MQ=255) cgttggcggcATTAGCCCGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAgg < 3:346234/145‑1 (MQ=255) aCCGGGCGGCATTAGCCCGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATgg > 2:219404/1‑130 (MQ=255) aCCGGGCGGCATTAGCCCGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATgg < 1:219404/130‑1 (MQ=255) gcggcATTAGCCCGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTg < 2:173475/149‑1 (MQ=255) aTTAGCCCGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACg > 8:352161/1‑112 (MQ=255) aTTAGCCCGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACg < 7:352161/112‑1 (MQ=255) cccGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTgg > 4:195554/1‑149 (MQ=255) ccGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGgc > 8:210652/1‑149 (MQ=255) cGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGgcg > 5:242959/1‑149 (MQ=255) gCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGgcgc < 1:3322/149‑1 (MQ=255) aGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGgcgcgc < 1:180428/149‑1 (MQ=255) gAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGGCGCGCTTTCAc < 3:195554/147‑1 (MQ=255) gAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGGCGCGCTTTCACGa < 2:184065/149‑1 (MQ=255) gCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGGCGCGCTTTCACGAGc > 6:296211/1‑146 (MQ=255) cAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGGCGCGCTTTCACGAGCAAGAGccc < 6:45482/148‑1 (MQ=255) aaCCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGGCGCGCTTTCACGAGCAAGAGCCCGa > 3:167867/1‑149 (MQ=255) cTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGGCGCGCTTTCACGAGCAAGAGCCCGACCAGCt < 5:296211/149‑1 (MQ=255) ggAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGGCGCGCTTTCACGAGCAAGAGCCCGACCAGCTTGGcc < 5:173878/149‑1 (MQ=255) aGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCACTCCAGCAGCAGGTCCTGGAGCAGTTGGCGCGCTTTCGCGCGCAAGAGCCCGACCAGCTTGGGCCTGACCGTGAt > 8:136173/1‑149 (MQ=255) tACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGGCGCGCTTTCACGAGCAAGAGCCCGACCAGCTTGGCCCTGACCGTGATCGc > 8:227808/1‑149 (MQ=255) cGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGGCGCGCTTTCACGAGCAAGAGCCCGACCAGCTTGGCCCTGACCGTGATCGCTTg < 8:166253/149‑1 (MQ=255) ggATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGGCGCGCTTTCACGAGCAAGAGCCCGACCAGCTTGGCCCTGACCGTGATCGCTTgc > 5:162670/1‑149 (MQ=255) cctgccGGGTGGCCACCACCC‑GCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGGCGCGCTTTCACGAGCAAGAGCCCGACCAGCTTGGCCCTGACCGTGATCGCTTGCGGCGCt > 8:283271/6‑149 (MQ=255) tgtgCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGGCGCGCTTTCACGAGCAAGAGCCCGACCAGCTTGGCCCTGACCGTGATCGCTTGCGgcgc < 7:227808/148‑1 (MQ=255) tgtgCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGGCGCGCTTTCACGAGCAAGAGCCCGACCAGCTTGGCCCTGACCGTGATCGCTTGCGGCGCt > 3:353814/1‑149 (MQ=255) tgccGGGTGGCCACCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGGCGCGCTTTCACGAGCAAGAGCCCGACCAGCTTGGCCCTGACCGTGATCGCTTGCGGCGCtt > 7:298059/4‑149 (MQ=255) tgCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGGCGCACTTTCACGAGCAAGAGCCCGACCAGCTTGGCCCTGACCGTGATCGCTTGCGGCGCttt > 8:178725/1‑149 (MQ=255) gccGGGTGGCCACCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGGCGCGCTTTCACGAGCAAGAGCCCGACCAGCTTGGCCCTGACCGTGATCGCTTGCGGCGCttt < 8:298059/147‑1 (MQ=255) gCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGGCGCGCTTTCACGAGCAAGAGCCCGACCAGCTTGGCCCTGACCGTGATCGCTTGCGGCGCTTTg > 5:110296/1‑149 (MQ=255) cGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGGCGCGCTTTCACGAGCAAGAGCCCGACCAGCTTGGCCCTGACCGTGATCGCTTGCGGCGCTTTGt < 4:167867/149‑1 (MQ=255) gtggtgGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGGCGCGCTTTCACGAGCAAGAGCCCGACCAGCTTGGCCCTGACCGTGATCGCTTGCGGCGCTTTGTAGc < 7:210652/149‑1 (MQ=255) ggtggCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGGCGCGCTTTCACGAGCAAGAGCCCGACCAGCTTGGcc < 4:363505/116‑1 (MQ=255) ggtggCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGGCGCGCTTTCACGAGCAAGAGCCCGACCAGCTTGGcc > 3:363505/1‑116 (MQ=255) gtggCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGGCGCGCTTTCACGAGCAAGAGCCCGACCAGCTTGGCCCTGACCGTGATCGCTTGCGGCGCTTTGTAGCCtt < 5:226480/149‑1 (MQ=255) | GCTGCGCGATGCAGCGGATCTGGAGCAGGCACTGCCAGCACTGCTCGCCAGTGCACCGGGCGGCATTAGCCCGCAGCGACTCGAGCGGCAGTTCAACCGCCTGCGGGAAACCTGGCAGTTACCGGATGATGTGCGGGTGGTGGCCACCCGGCAGGGCCAACTGCTG‑TTCGCCAACGCTCAATGGCAGGCGCTCAAGCAGCAGGTCCTGGAGCAGTTGGCGCGCTTTCACGAGCAAGAGCCCGACCAGCTTGGCCCTGACCGTGATCGCTTGCGGCGCTTTGTAGCCTT > NC_002947/583256‑583543 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |