| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 161,731 | G→T | 9.2% | intergenic (‑226/+20) | PP_0152 ← / ← PP_0153 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 161,731 | 0 | G | T | 9.2% | 178.2 / 3.0 | 71 | intergenic (‑226/+20) | PP_0152/PP_0153 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (40/22); new base T (2/6); total (42/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.25e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATACGGCGCTGCCACAGCAGCAG > NC_002947/161586‑161879 | ctgTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGaa < 4:341876/148‑1 (MQ=255) gCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCgg > 7:30956/1‑149 (MQ=255) ccAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCgg < 3:306834/148‑1 (MQ=255) cAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAATTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGc > 1:180850/1‑148 (MQ=255) aGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGc > 3:214029/1‑147 (MQ=255) aGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGc > 6:334720/1‑147 (MQ=255) aCAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGc > 6:356231/1‑149 (MQ=255) cAACTGTAACGGCGAATTTTAATTTTTGTAAACCTGCCCGGGCCCCAACCTCACCCCCGCGACGGCGCGTCTCTCGCGCAAAAAAAACCCCGCGCCCGTCACCTCCACCGGGTTTGAGAAATTCCCGGTGCCGGCGAA‑‑‑GCCGGCAAGcc < 2:188486/149‑1 (MQ=255) aaCTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCg > 8:132817/1‑149 (MQ=255) tGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCgg > 7:67281/1‑147 (MQ=255) aGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCt > 2:264674/1‑147 (MQ=255) ttttaattttTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAgcgc > 5:322374/1‑146 (MQ=255) ttttaattttTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAgcgc > 3:263215/1‑146 (MQ=255) taattttTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCGGTCACCTGCAACGGGTTTGAGAAATACACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGa > 2:159011/1‑147 (MQ=255) attttttGTAAAACTGTACGGGTCGAAATCTCAAGCACGCTACTGCGCGTCTCTCGGCCAATAAAAACCCCGCTGCAGTCACCTGCAAGGGTTTTTATAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGaaa < 4:230706/146‑1 (MQ=255) tGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCTGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTg < 4:97077/148‑1 (MQ=255) gTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCt > 2:135512/1‑149 (MQ=255) tAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCTTC‑‑‑GCCGGCaccgt > 5:21785/1‑117 (MQ=255) tAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCTTC‑‑‑GCCGGCaccgt < 6:21785/121‑5 (MQ=255) aaacCTGAACTGGTCTCAAGCTTAAGCCGGCGACGGCGCGTCTCTCGGGAAATAAAAAACCCGCTGAAGTCACCTGAATCGGGTTTTATAAATTCCCGGTGCCGGCTAC‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTc < 8:69674/148‑1 (MQ=255) aaaaCTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTc > 7:69674/1‑148 (MQ=255) aaaCTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAg < 8:67281/149‑1 (MQ=255) gTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGGTGTAGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCg > 1:124329/1‑148 (MQ=255) gTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGa > 1:103345/1‑112 (MQ=255) tCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACg > 1:361343/1‑149 (MQ=255) gaatccTGAACCCCGCGTCTGGGCGTCTGTCGGGAAATAAAACCCCCTGTGCATTCACTTTCACGGTGTTTTATAATTTCACGTGGCGGGGCAC‑‑‑GCGGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCt < 2:191593/144‑1 (MQ=255) cAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTg > 5:377964/1‑149 (MQ=255) aaGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGGAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCg > 1:281075/1‑149 (MQ=255) aaGCACCCCACTCCCCGTCTATCGGGAAATAAAAAACCCGCTCACGTCCACTTCAAGGGTTTTTATAAATAAACGGTCCCGGCTAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTc < 4:263215/148‑1 (MQ=255) aCGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGa > 5:16435/1‑149 (MQ=255) cgcgACTGCGCGTCTCTCGGGCAATAAAAACCCCGCTGCAGTCACCTGCAAGGGGTTTTATAAATTCACGGGGCCGGCGAC‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGAt < 1:264674/149‑1 (MQ=255) gctaCTGCGCTTCTCTCGGGAAAAAAAAAACCCGCTCCAGACACCTGCAAGGGTTTTTATAAATTCACGGTGCCGGCGAC‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATa < 7:132817/146‑1 (MQ=255) gcgACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATa > 3:107861/1‑149 (MQ=255) gcgTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTc > 3:337315/1‑149 (MQ=255) tctcGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGc > 5:69516/1‑147 (MQ=255) gggCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCtt > 3:270041/1‑98 (MQ=255) gggCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCtt < 4:270041/98‑1 (MQ=255) ggCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATAACGGCGTCTGCCAGCAgg > 3:192484/1‑149 (MQ=255) cAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCg > 4:4884/1‑149 (MQ=255) aaaaaaacaCCCGCTGCCGCCCCCTCCTCCGGTTTTTATACATCCCCGGCGCGGGCGAT‑‑‑CCCGCCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCgg < 4:192484/146‑1 (MQ=255) aaaaaaaacCCCGCTGCAGTCACCTGCAACGGGTTTGATAAATTCACGGGGCCGGCGAC‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCgg < 2:124329/146‑1 (MQ=255) aaTAAAAACCCCCCGGCCGTCACCTCCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCgg < 8:185038/149‑1 (MQ=255) aaTAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTTATAAATTCACGTGGCGGGCTAA‑‑‑GCGGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCgg < 8:30956/149‑1 (MQ=255) aaTAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCgg > 1:330201/1‑149 (MQ=255) tAAAAAACCCGCTGCAGTCCCCTGCAACGGTTTTGAGAAATGCACGGGGCCGGCGAC‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGa < 5:356231/149‑1 (MQ=255) aaaaacccccGCTGCCGTCACCTGCAACGGGTTTGAGAAATTCCCGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGa < 8:152422/142‑1 (MQ=255) aaaaaaaCCCGCTGCAGTCACCTCCAAGGGTTTTTATAATTTCCGGGGGCGGGCTAC‑‑‑GCGGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGa < 6:16435/148‑1 (MQ=255) aaaaaaaCCCGCTCCAGCCACCTCAAAGGGGTTTTATAAATTCCCGGTCCGGGCTAC‑‑‑GCGGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGa < 5:328438/148‑1 (MQ=255) aaaaaCCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGa > 7:152422/1‑147 (MQ=255) caaaCCCGTTGCAGGTGACTGCAGCGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCAGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTc > 2:232258/2‑149 (MQ=255) gCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTg > 1:354099/1‑83 (MQ=255) cAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGc > 1:333036/1‑147 (MQ=255) gTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGt > 1:187946/1‑149 (MQ=255) ccTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTgac > 6:369104/1‑149 (MQ=255) cTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTgac > 2:23923/1‑148 (MQ=255) cAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTgacgac < 2:281075/148‑1 (MQ=255) cAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGacgacg > 6:345847/1‑149 (MQ=255) ggTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCGGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTgg < 4:107861/149‑1 (MQ=255) tttGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGt > 3:217566/1‑148 (MQ=255) ataatttCACGGTGCCGGCGAC‑‑‑GCGGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATa < 2:187946/143‑1 (MQ=255) agaAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCCGGCGGGAGTCCAGGCGAGCCAGTTGACGCCGGCTGGTCAtcc > 6:117484/1‑147 (MQ=255) agaAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATAc > 5:279139/1‑149 (MQ=255) agaAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATAc > 2:34783/1‑149 (MQ=255) aaTTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATACgg < 6:69516/148‑1 (MQ=255) aCGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATACGGCGCTg < 6:377964/148‑1 (MQ=255) ttGCCGGCTTC‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATACGGCGCTGCca > 1:138895/2‑148 (MQ=255) tGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATACGGCGCTGCcaca < 5:334720/149‑1 (MQ=255) ccGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATACGGCGCTGCCAcagc < 6:279139/149‑1 (MQ=255) ggCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATACGgc > 1:23800/1‑136 (MQ=255) ggCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATACGgc < 2:23800/136‑1 (MQ=255) gCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATACGGCGCTGCCAcagcag > 7:168882/1‑148 (MQ=255) gAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATACGGCGCTGCCAcagcagcag < 1:23923/149‑1 (MQ=255) | CTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAA‑‑‑GCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATACGGCGCTGCCACAGCAGCAG > NC_002947/161586‑161879 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |