Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	936,228	T→C	6.0%	T3132A (ACC→GCC) ‡	PP_0806 ←	surface adhesion protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	936,228	0	T	C	6.0%	192.8 / 2.3	67	T3132A (ACC→GCC) ‡	PP_0806	surface adhesion protein
Reads supporting (aligned to +/- strand):  ref base T (33/29);  new base C (2/2);  total (35/32)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.54e-01

CCATCGGCACTCAGTTGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCGGG  >  NC_002947/936089‑936373                                                                                                                                             |                                                                                                                                                  ccATCGGCACTCAGTTGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGa                                                                                                                                           <  2:350559/148‑1 (MQ=255) ccATCGGCACTCAGTTGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGAc                                                                                                                                          <  1:155870/149‑1 (MQ=255) ccATCGGCACTCAGTTGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGAc                                                                                                                                          >  5:75760/1‑149 (MQ=255)  cATCGGCACTCAGTTGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACg                                                                                                                                         <  2:127577/149‑1 (MQ=255)  cATCGCCACTCAGTTGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTCGGC‑CTGACCCCGGCCCAGGCCAACg                                                                                                                                         <  2:204773/149‑1 (MQ=255)   aTCGGCACTCAGTTGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACgg                                                                                                                                        >  1:320549/1‑149 (MQ=255)          cTCAGTTGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCt                                                                                                                                 <  6:319882/149‑1 (MQ=255)           tCAGTTGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTg                                                                                                                                >  1:264804/1‑149 (MQ=255)              gTTGCAGTTCGCTGTCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCACCGTCGGC‑CTGACCCCGGCCCAGGCCAACggc                                                                                                                                       <  8:314030/139‑2 (MQ=38)              gTTGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCACCGTCGGC‑CTGACCCCGGCCCAGGCCAACggc                                                                                                                                       >  7:314030/1‑138 (MQ=38)                 gCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATcc                                                                                                                          >  4:240639/1‑149 (MQ=255)                    gTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGa                                                                                                                       <  7:289336/149‑1 (MQ=255)                            gCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCt                                                                                                                <  8:1983/148‑1 (MQ=255)                            gCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTg                                                                                                               >  7:234165/1‑149 (MQ=255)                                  ttGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCt                                                                                                         >  7:70628/1‑149 (MQ=255)                                   tGGGGGGGTTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGTACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCt                                                                                                         <  2:264804/148‑1 (MQ=255)                                       cGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCa                                                                                                    <  3:240639/149‑1 (MQ=255)                                          ggTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCg                                                                                                                    <  5:331525/130‑1 (MQ=255)                                          ggTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCg                                                                                                                    >  6:331525/1‑130 (MQ=255)                                           gTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGa                                                                                                 >  3:170786/1‑148 (MQ=255)                                           gTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGAc                                                                                                <  8:70628/149‑1 (MQ=255)                                               tatCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTg                                                                                            <  6:75760/149‑1 (MQ=255)                                                atCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGc                                                                                           >  3:51084/1‑149 (MQ=255)                                                       gCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTgcgc                                                                                    <  2:320549/149‑1 (MQ=255)                                                       gCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGGTGGC‑CTGGGCCGGGGGCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACAtt                                                                                             <  3:340198/140‑1 (MQ=255)                                                         ggTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGt                                                                                  >  8:44984/1‑149 (MQ=255)                                                                     aGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCa                                                                      >  5:245815/1‑149 (MQ=255)                                                                          gCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTgg                                                                 <  8:234165/149‑1 (MQ=255)                                                                                  ttGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCt                                                           <  4:170786/147‑1 (MQ=255)                                                                                  ttGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGc                                                         <  4:51084/149‑1 (MQ=255)                                                                                     ccAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGCCGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAg                                                                                                   >  6:122509/1‑104 (MQ=255)                                                                                     ccAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAg                                                                                                   <  5:122509/104‑1 (MQ=255)                                                                                     ccAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCgg                                                      >  5:366957/1‑149 (MQ=255)                                                                                     ccAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CGGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCgg                                                      >  1:77231/1‑149 (MQ=255)                                                                                     ccAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGA‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCgg                                                      >  1:256886/1‑149 (MQ=255)                                                                                      cAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGt                                                     >  3:168754/1‑149 (MQ=255)                                                                                        gcgcCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGCCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTGCCACCTGGGAATCTGCCGGtcc                                                   >  3:244603/1‑147 (MQ=255)                                                                                             gTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTAc                                              >  4:69827/1‑149 (MQ=255)                                                                                                 aCCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCgg                                           >  3:233645/1‑148 (MQ=255)                                                                                                  ccGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGa                                          >  6:160716/1‑148 (MQ=255)                                                                                                   cGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGaaa                                        >  5:1378/1‑149 (MQ=255)                                                                                                     ccACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACg                                      >  3:178646/1‑149 (MQ=255)                                                                                                     ccACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCACTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACg                                      >  6:297875/1‑149 (MQ=255)                                                                                                       aCGACATCCAGGGTCTCGCCGTTGGCGCTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGc                                     >  1:192539/1‑149 (MQ=255)                                                                                                        cGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCACTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTg                                   <  5:297875/149‑1 (MQ=255)                                                                                                          aCATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGa                                 <  6:1378/149‑1 (MQ=255)                                                                                                          aCATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGa                                 <  6:245815/149‑1 (MQ=255)                                                                                                           cATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAg                                <  4:233645/149‑1 (MQ=255)                                                                                                             tCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGcc                              >  8:172337/1‑149 (MQ=255)                                                                                                             tCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGcc                              >  7:226765/1‑149 (MQ=255)                                                                                                              ccAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCt                                    >  1:7990/1‑142 (MQ=255)                                                                                                              ccAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCt                                    <  2:7990/142‑1 (MQ=255)                                                                                                               cAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGt                            <  7:172337/149‑1 (MQ=255)                                                                                                                aGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTgg                                                                 <  2:116209/111‑1 (MQ=255)                                                                                                                aGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTc                           <  7:44984/149‑1 (MQ=255)                                                                                                                   gcttcaccGTCGGC‑CTGACCCCGGCCCAGGCCAACGGCGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCAcc                        >  7:304817/7‑149 (MQ=37)                                                                                                                        gCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGCAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACAGTGCCCTGCGCCTCACGCACTTCCACCAGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGcca                   >  5:125478/1‑149 (MQ=255)                                                                                                                        gCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGcca                   <  3:249953/149‑1 (MQ=255)                                                                                                                          cGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGcc                              <  5:55539/136‑1 (MQ=255)                                                                                                                          cGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGcc                              >  6:55539/1‑136 (MQ=255)                                                                                                                           gTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGccacca                >  5:365598/1‑149 (MQ=255)                                                                                                                                c‑cTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGCCACCACCAcg           >  5:190468/1‑149 (MQ=255)                                                                                                                                  cTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTgg                                                                 >  4:219301/1‑94 (MQ=255)                                                                                                                                  cTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTgg                                                                 <  3:219301/94‑1 (MQ=255)                                                                                                                                  cTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGCCACCACCAcgc          >  1:312782/1‑149 (MQ=255)                                                                                                                                  cTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGCCACCACCAcgc          <  4:178646/149‑1 (MQ=255)                                                                                                                                          gggTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCggg  <  2:256886/149‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                  CCATCGGCACTCAGTTGCAGTTCGCTGGCTTCATTGGGCGGGGTGATATCGGGGGCGGTGATCTGGGTAGGCAGCGAACTGTTGCCAGCGCCGTCAACCGCCACGACATCCAGGGTCTCGCCGTTGGC‑CTGGGCCGGGGTCAGGCCGACGGTGAAGCTGCCATCCGGACCGGCCTGGGCGCTGCCCAGGACATTGCCCTGCGCGTCACGCACTTCCACCTGGGTATCTGCCGGTGCGGTACCGGAAACGCTGGAGCCGTCACCGGCCACCACCACGCCGCTCGGG  >  NC_002947/936089‑936373

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑