Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,017,839 A→G 7.9% L8P (CTT→CCT)  PP_5461 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,017,8390AG 7.9% 216.2 / 7.4 76L8P (CTT→CCT) PP_5461hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (41/29);  new base G (3/3);  total (44/32)
Fisher's exact test for biased strand distribution p-value = 6.92e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.45e-01

CAGTCAGCAAGCAGGTATCAAAGCATTGAAAATGCCTTGTCCCGTACACAAAAAAACTGACACTCCCCTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGCCACAGCCTCAATGGCAACCTCGT  >  NC_002947/1017693‑1017987
                                                                                                                                                  |                                                                                                                                                    
cAGTCAGCAAGCAGGTATCAAAGCATTGAAAATGCCTTGTCCCGTACACAAAAAAACTGACACTCCCCTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTaaaa                                                                                                                                                      <  3:361832/147‑1 (MQ=255)
 aGTCAGCAAGCAGGTATCAAAGCATTGAAAATGCCTTGTCCCGTACACAAAAAAACTGACACTCCCCTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTg                                                                                                                                                   >  7:114706/1‑149 (MQ=255)
       caagcaGGTATCAAAGCATTGAAAATGCCTTGTCCCGTACACAAAAAAACTGACACTCCCCTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGacac                                                                                                                                              >  5:281384/1‑148 (MQ=255)
          gcaGGTATCAAAGCATTGAAAATGCCTTGTCCCGTACACAAAAAAACTGACACTCCCCTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACTTTTAGGTGGACACCAtg                                                                                                                                          <  7:24318/149‑2 (MQ=255)
          gcaGGTATCAAAGCATTGAAAATGCCTTGTCCCGTACACAAAAAAACTGACACTCCCCTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACTTTTAGGTGGACACCAtg                                                                                                                                          <  7:21913/149‑2 (MQ=255)
               tATCAAAGCATTGAAAATGCCTTGTCCCGTACACAAAAAAACTGACACTCCCCTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTgg                                                                                                                                     <  2:27875/149‑1 (MQ=255)
                 tCAAAGCATTGAAAATGCCTTGTCCCGTACACAAAAAAACTGACACTCCCCTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGc                                                                                                                                    <  6:281182/148‑1 (MQ=255)
                   aaaGCATTGAAAATGCCTTGTCCCGTACACAAAAAAACTGACACTCCCCTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGccc                                                                                                                                  <  5:202841/148‑1 (MQ=255)
                     aGCATTGAAAATGCCTTGTCCCGTACACAAAAAAACTGACACTCCCCTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATc                                                                                                                               <  8:266961/149‑1 (MQ=255)
                       cATTGAAAATGCCTTGTCCCGTACACAAAAAAACTGACACTCCCCTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATc                                                                                                                               >  1:213523/1‑147 (MQ=255)
                        aTTGAAAATGCCTTGTCCCGTACACAAAAAAACTGACACTCCCCTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTgg                                                                                                                                     <  4:354750/140‑1 (MQ=255)
                        aTTGAAAATGCCTTGTCCCGTACACAAAAAAACTGACACTCCCCTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTgg                                                                                                                                     >  3:354750/1‑140 (MQ=255)
                            aaaaTGCCTTGTCCCGTACACAAAAAAACTGACACTCCCCTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGa                                                                                                                                                 <  5:236097/124‑1 (MQ=255)
                            aaaaTGCCTTGTCCCGTACACAAAAAAACTGACACTCCCCTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGa                                                                                                                                                 >  6:236097/1‑124 (MQ=255)
                            aaaaTGCCTTGTCCCGTACACAAAAAAACTGACACTCCCCTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGa                                                                                                                        >  4:210000/1‑149 (MQ=255)
                               aTGCCTTGTCCCGTACACAAAAAAACTGACACTCCCCTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGAttt                                                                                                                     <  3:210000/149‑1 (MQ=255)
                                    ttGTCCCGTACACAAAAAAACTGACACTCCCCTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAg                                                                                                                >  7:193174/1‑149 (MQ=255)
                                       tCCCGTACACAAAAAAACTGACACTCCCCTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGc                                                                                                              <  2:213523/148‑1 (MQ=255)
                                         ccGTACACAAAAAAACTGACACTCCCCTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATATCTGGCCCAGCAAGCGGATTTTCCAGGCATc                                                                                                           >  5:212904/1‑149 (MQ=255)
                                                 aaaaaaaCTGACACTCCCCTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAgcgc                                                                                                   >  8:1993/1‑149 (MQ=255)
                                                             acTCCCCTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACaa                                                                                        >  2:230625/1‑148 (MQ=255)
                                                              cTCCCCTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATa                                                                                      <  7:1993/149‑1 (MQ=255)
                                                                  ccTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAAcc                                                                                  >  7:338529/1‑149 (MQ=255)
                                                                  ccTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAAcc                                                                                  >  1:2638/1‑149 (MQ=255)
                                                                  ccTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAAcc                                                                                  >  3:151103/1‑149 (MQ=255)
                                                                   cTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAACCCt                                                                                 >  4:311427/1‑149 (MQ=255)
                                                                      aTAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCtt                                                                                <  2:2638/147‑1 (MQ=255)
                                                                       tAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTc                                                                              >  4:144759/1‑148 (MQ=255)
                                                                         gTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCaaa                                                                           <  8:114706/149‑1 (MQ=255)
                                                                         gTCGAATCCCGGTATACGTCCGGCCAACAAATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAATTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCaaa                                                                           <  8:234697/149‑1 (MQ=255)
                                                                          tCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAg                                                                          >  2:61471/1‑149 (MQ=255)
                                                                               tCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGcc                                                                        >  3:26465/1‑146 (MQ=255)
                                                                                  cGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGt                                                                  <  3:144759/149‑1 (MQ=255)
                                                                                  cGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCCAACGCCAAGCTCTCCACCTAAAACTGCACACCATAACTCGCCCATCAAGCGGATTATCCAGGCATCCTCAGCGCCGTACCTACAAAAAACCTTTCAAAGCCCagact                                                                  >  7:118388/1‑147 (MQ=255)
                                                                                   ggTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTg                                                                 <  4:151103/149‑1 (MQ=255)
                                                                                    gTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGc                                                                >  1:167388/1‑149 (MQ=255)
                                                                                        ccgtccgGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGcgac                                                             >  4:254897/1‑148 (MQ=255)
                                                                                         cgtccgGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGcgac                                                             >  6:53383/1‑147 (MQ=255)
                                                                                          gtccgGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAg                                                          >  6:366525/1‑149 (MQ=255)
                                                                                             ctgCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGccc                                                       >  6:87543/3‑149 (MQ=255)
                                                                                               gCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATaaa                                                                                    <  7:73863/118‑1 (MQ=255)
                                                                                               gCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATaaa                                                                                    >  8:73863/1‑118 (MQ=255)
                                                                                                 cAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTATAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGgcg                                                   >  6:171662/1‑149 (MQ=255)
                                                                                                  aaCACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGgcgc                                                  <  3:254897/149‑1 (MQ=255)
                                                                                                     acaTCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTc                                               >  2:151799/1‑149 (MQ=255)
                                                                                                       aTCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCa                                             >  5:144959/1‑149 (MQ=255)
                                                                                                          ttCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCg                                          >  1:162224/1‑149 (MQ=255)
                                                                                                           tCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGgc                                                    <  4:34268/138‑1 (MQ=255)
                                                                                                           tCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGgc                                                    >  3:34268/1‑138 (MQ=255)
                                                                                                              tGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCaaa                                      >  4:29955/1‑149 (MQ=255)
                                                                                                                aCGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACa                                    >  7:208633/1‑149 (MQ=255)
                                                                                                                 cGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACAt                                   >  1:289110/1‑149 (MQ=255)
                                                                                                                  gAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATc                                  >  7:346993/1‑149 (MQ=255)
                                                                                                                   aaaCCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCg                                 <  3:29955/149‑1 (MQ=255)
                                                                                                                         gCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTgg                           <  4:26465/149‑1 (MQ=255)
                                                                                                                            aaGGCCATGGTGTCCACCTAAAAGAGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGcc                        <  6:212904/149‑1 (MQ=255)
                                                                                                                                ccATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCCAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGCcaca                     <  8:338529/148‑1 (MQ=255)
                                                                                                                                ccATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGCCACAg                    >  1:121095/1‑149 (MQ=255)
                                                                                                                                    ggTGTCCACTTTTAGGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGCCACAGCCt                 >  4:201484/1‑148 (MQ=255)
                                                                                                                                     gtgtCCACTTTTAGGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCt                                                >  6:380570/1‑116 (MQ=255)
                                                                                                                                     gtgtCCACTTTTAGGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCt                                                <  5:380570/116‑1 (MQ=255)
                                                                                                                                     gtgtCCACCTAAAATTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGc                         >  1:140005/1‑139 (MQ=255)
                                                                                                                                     gtgtCCACCTAAAATTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGc                         <  2:140005/139‑1 (MQ=255)
                                                                                                                                      tgtCCACTTTTAGGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCCCAAACATCGCCTTGGGCCACAGCCTCaa              >  4:91123/1‑149 (MQ=255)
                                                                                                                                      tgtCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGGGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTg                            <  7:129111/135‑1 (MQ=255)
                                                                                                                                      tgtCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGGGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTg                            >  8:129111/1‑135 (MQ=255)
                                                                                                                                      tgtCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGCCACAGCCTCaa              <  5:53383/149‑1 (MQ=255)
                                                                                                                                        tCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGCCACAGCCTCAAt             <  1:151799/148‑1 (MQ=255)
                                                                                                                                        tCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGCCACAGCCTCAATg            <  8:346993/149‑1 (MQ=255)
                                                                                                                                          cACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGCCACAGCCTc                >  1:41682/1‑143 (MQ=255)
                                                                                                                                          cACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGCCACAGCCTc                <  2:41682/143‑1 (MQ=255)
                                                                                                                                          cACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGCCACAGCCTCAATgg           >  4:303648/1‑148 (MQ=255)
                                                                                                                                            ccTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCt                                                <  2:105142/109‑1 (MQ=255)
                                                                                                                                            ccTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCt                                                >  1:105142/1‑109 (MQ=255)
                                                                                                                                             cTAAAAGTGGACACCATTTCTTGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGCCACAGCCTCAATGGCAAc       <  6:281384/149‑1 (MQ=255)
                                                                                                                                             cTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGCCACAGCCTCAATGGCAAc       >  1:173140/1‑149 (MQ=255)
                                                                                                                                              tAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACGATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGCCACAGCCTCAATGGCAAcc      >  1:143597/1‑149 (MQ=255)
                                                                                                                                               aaaaGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGCCACAGCCTCAATGGCAAcc      >  8:172982/1‑148 (MQ=255)
                                                                                                                                                  aGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGCCACAGCCTCAATGGCAACCTCGt  <  2:173140/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                    
CAGTCAGCAAGCAGGTATCAAAGCATTGAAAATGCCTTGTCCCGTACACAAAAAAACTGACACTCCCCTGATAGTCGAATCCCGGTATCCGTCCGGCCAACACATCTTCCTGACGAAACCGGCGAAGGCCATGGTGTCCACCTAAAAGTGGACACCATTTCTGGCCCATCAAGCGGATTTTCCAGGCATCCTCAGCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGCCACAGCCTCAATGGCAACCTCGT  >  NC_002947/1017693‑1017987

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑