Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,100,209 | G→C | 7.0% | V132V (GTG→GTC) ‡ | mlaF → | ABC transporter ATP‑binding protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,100,209 | 0 | G | C | 7.0% | 176.9 / 2.5 | 57 | V132V (GTG→GTC) ‡ | mlaF | ABC transporter ATP‑binding protein |
Reads supporting (aligned to +/- strand): ref base G (31/21); new base C (2/2); total (33/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CGAAAGCAGATGGGCGTGCTGTTCCAGAGCGGCGCGTTGTTCACCGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTTCGTCGGCCAGGACCCGATCGCCATGG > NC_002947/1100063‑1100354 | cGAAAGCAGATGGGCGTGCTGTTCCAGAGCGGCGCGTTGTTCACCGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTggg > 4:289948/1‑149 (MQ=255) gAAAGCAGATGGGCGTGCTGTTCCAGAGCGGCGCGTTGTTCACCGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGc > 4:165678/1‑149 (MQ=255) cAGATGGGCGTGCTGTTCCAGAGCGGCGCGTTGTTCACCGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCCACGGCCTgca < 5:30337/149‑2 (MQ=255) aTGGGCGTGCTGTTCCAGAGCGGCGCGTTGTTCACCGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCgg < 4:151291/149‑1 (MQ=255) aTGGGCGTGCTGTTCCAGAGCGGCGCGTTGTTCACCGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCgg < 4:145762/149‑1 (MQ=255) tGGGCGTGCTGTTCCAGAGCGGCGCGTTGTTCACCGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGt < 4:12255/149‑1 (MQ=255) ttCCAGAGCGGCGCGTTGTTCACCGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCt > 4:241515/1‑149 (MQ=255) gcgcGTTGTTCACCGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCcgac < 3:51098/149‑1 (MQ=255) cgTTGTTCACCGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAg < 5:312923/149‑1 (MQ=255) aCCGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCgg > 7:118449/1‑149 (MQ=255) ccGACCTCGATGTGTTCTTGAACGTCGCGTTGCCGTTGCGCGTGCATACTGAGCTGTCGGAGGAAATGATCCTTGACATCGTGTTGATGAAGCTGATGGCCGTGTGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCgtt < 8:266598/149‑3 (MQ=255) ccGACCTCGATGTGTTCGAGCACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGAGATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACATGATGCCCGCCGCGCTGACCGGt > 4:125467/1‑149 (MQ=255) ccGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGt < 3:241515/149‑1 (MQ=255) cGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTg < 3:165678/149‑1 (MQ=255) gtgtTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAgcg > 6:233797/1‑149 (MQ=255) gtgtTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAgcg > 6:228613/1‑149 (MQ=255) ttCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGAGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCg > 3:212339/1‑149 (MQ=255) agaACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGccacacg > 8:313801/1‑144 (MQ=255) gaACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTgg > 7:44261/1‑149 (MQ=255) gTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCt > 2:210484/1‑149 (MQ=255) gTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCt > 7:320239/1‑149 (MQ=255) tCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTg > 5:144955/1‑149 (MQ=255) gcgTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCcgacg > 1:97959/1‑112 (MQ=255) gcgTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCcgacg < 2:97959/112‑1 (MQ=255) ccGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTCACATCGTGATGATGAAGCTGCAGGCCGAGGGCCTGCGCGGTGCCATCGACCAGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCCTGTGGCGCTGGCCCCGGc > 7:149107/1‑149 (MQ=255) gTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCt < 3:289948/149‑1 (MQ=255) cacaCTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGCGCTGTCCGGTGGCATGAAGCGCCGGGTGGCGCTGGCCCGGGCGATTGCCCTGGa > 4:109102/4‑149 (MQ=255) tCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCg > 7:342175/1‑148 (MQ=255) tCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCg > 5:127437/1‑148 (MQ=255) tCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGAACCg > 2:106901/1‑148 (MQ=255) cAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCAAGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCg > 2:289263/1‑147 (MQ=255) aGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGc < 8:44261/147‑1 (MQ=255) aGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGc < 8:351618/147‑1 (MQ=255) cGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGGAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTc < 6:160237/149‑1 (MQ=255) aCGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATg > 1:366186/1‑149 (MQ=255) gAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTa > 8:165332/1‑149 (MQ=255) aTCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTacgacg > 1:31799/1‑148 (MQ=255) tCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGACCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGaa > 6:209118/1‑149 (MQ=255) ccGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAAc > 1:319950/1‑149 (MQ=255) aCATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCGGCAGATCCTCATGTACGACGAACCGTtc < 1:210484/149‑1 (MQ=255) aCATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTtc < 2:47149/149‑1 (MQ=255) cATCGTGTTGATGATGCTGCAGGGCGTGGGCCTGCGCGGTGCCATCGACGTGTTGCCCGACGAGCTGTCCGGTGGGATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTtc < 4:212339/148‑1 (MQ=255) gtgtTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTTCGTCgg > 2:249737/1‑149 (MQ=255) tgtTGATTCAGGGGCTGGCCGGTGTCCGGCGCGGTGCCATCGACCTGATGCGCGACGAGCTGTCCGGTGGCTTGATGCGCCGTGTGGGTGTGGCCCGTGCGTTTGCCCTGGACCCGCAGATCCTCATGTACGAGGTACCGTTCGTCTGc < 8:149107/149‑1 (MQ=255) gatgaAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTTCGTCGGCCAgg > 8:344804/1‑149 (MQ=255) gatgaAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTTCGTCGGCCAg > 3:5646/1‑148 (MQ=255) atgaAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTTCGTCGGCCAggc > 4:218025/1‑148 (MQ=255) gaAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTTCGTCGGCCAGGAcc > 2:252418/1‑149 (MQ=255) aaGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTTCGTCGGCCAGGAccc < 1:249737/149‑1 (MQ=255) ccgcgCAGGCCCACGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGCCCCGCGCATCCGCATGTACGACGAACCGTTCGACGGCCAGGcccc > 4:193504/5‑148 (MQ=255) gCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTTCGTCGGCCAGGACCCGa < 8:342175/149‑1 (MQ=255) cTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTTCGTCGGCCAGGACCCGAt > 3:45385/1‑149 (MQ=255) tGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGGAGATCCTCATGTACGACGAAACGATCGTCGGCCAGGACCCGATc > 8:262982/1‑149 (MQ=255) cgCAGGCCCACGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTTCGTCGGCCa < 3:273437/138‑1 (MQ=255) cgCAGGCCCACGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTTCGTCGGCCa > 4:273437/2‑139 (MQ=255) cGTGGGCCTGCGCTGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTTCGTCGGCCAGGACCCGATCGCCATgg < 7:262982/149‑1 (MQ=255) cGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCTACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCGAGACCCGCAGATCCTCATGTACGACGAACCGTTCGTCGGCCAGGACCCGATCGCCATgg < 1:106901/149‑1 (MQ=255) cGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTTCGTCGGCCAGGACCCGATCGCCATgg < 8:312990/149‑1 (MQ=255) | CGAAAGCAGATGGGCGTGCTGTTCCAGAGCGGCGCGTTGTTCACCGACCTCGATGTGTTCGAGAACGTCGCGTTCCCGTTGCGCGTGCATACTCAGCTGTCGGACGAAATGATCCGTGACATCGTGTTGATGAAGCTGCAGGCCGTGGGCCTGCGCGGTGCCATCGACCTGATGCCCGACGAGCTGTCCGGTGGCATGAAGCGCCGTGTGGCGCTGGCCCGGGCGATTGCCCTGGACCCGCAGATCCTCATGTACGACGAACCGTTCGTCGGCCAGGACCCGATCGCCATGG > NC_002947/1100063‑1100354 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |