| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,278,484 | A→T | 7.3% | intergenic (‑311/+252) | PP_5465 ← / ← PP_1117 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,278,484 | 0 | A | T | 7.3% | 242.1 / 7.3 | 82 | intergenic (‑311/+252) | PP_5465/PP_1117 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (35/41); new base T (2/4); total (37/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.85e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.46e-01 | |||||||||||
AGATTGCGCTATGTCCTACGGACAATGAAGAGCAAGAGCAGAAGCTTGATCTGTGTAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCTGTGCAGAAATCCGTCACTTGAAATGTGGCTCAAGGCCATGGAATA > NC_002947/1278336‑1278632 | aGATTGCGCTATGTCCTACGGACAATGAAGAGCAAGAGCAGAAGCTTGATCTGTGTAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACa‑‑aa < 3:305577/149‑1 (MQ=255) gcgcTATGTCCTACGGACAATGAAGAGCAAGAGCAGAAGCTTGATCTGTGTAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGtct < 7:40168/148‑1 (MQ=255) gcgcTATGTCCTACGGACAATGAAGAGCAAGAGCAGAAGCTTGATCTGTGTAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGtct < 2:265326/148‑1 (MQ=255) gcTATGTCCTACGGACAATGAAGAGCAAGAGCAGAAGCTTGATCTGTGTAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCtt > 8:256160/1‑149 (MQ=255) gcTATGTCCTACGGACAATGAAGAGCAAGAGCAGAAGCTTGATCTGTGTAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCtt < 5:185173/149‑1 (MQ=255) cTATGTCCTACGGACAATGAAGAGCAAGAGCAGAAGCTTGATCTGTGTAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACT‑‑TTGTCTCTTa < 5:100611/149‑1 (MQ=255) tATGTCCTACGGACAATGAAGAGCAAGAGCAGAAGCTTGATCTGTGTAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTAt > 4:144177/1‑149 (MQ=255) tGTCCTACGGACAATGAAGAGCAAGAGCAGAAGCTTGATCTGTGTAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACT‑‑TTGTCTCTTac < 2:288888/147‑2 (MQ=255) tGTCCTACGGACAATGAAGAGCAAGAGCAGAAGCTTGATCTGTGTAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATg < 6:150573/148‑1 (MQ=255) tccgtaggACAATGAAGAGCAAGAGCAGAAGCTTGATCTGTGTAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACAGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATgg > 2:73525/7‑147 (MQ=255) cTACGGACAATGAAGAGCAAGAGCAGAAGCTTGATCTGTGTAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACT‑‑TTGTCTCTTac > 4:335778/1‑142 (MQ=255) cTACGGACAATGAAGAGCAAGAGCAGAAGCTTGATCTGTGTAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACT‑‑TTGTCTCTTac < 3:335778/143‑2 (MQ=255) cGGACAATGAAGAGCAAGAGCAGAAGCTTGATCTGTGTAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTgg < 8:106842/148‑1 (MQ=255) cGGACAATGAAGAGCAAGAGCAGAAGCTTGATCTGTGTAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTg < 5:128330/147‑1 (MQ=255) gACAATGAAGAGCAAGAGCAGAAGCTTGATCTGTGTAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGt > 3:213381/1‑148 (MQ=255) cAATGAAGAGCATGAGCATAAGCTTGAGCTTTGTTATATTTATTATTATTAATGTACATCCTGTTTGTGAAGTGTTGGCTGTCTGTTCTTCA‑GAAACCGCAATTGCAGTGGGAGCGTAAGAGACT‑‑AAGTCTCTTATGGGAGTGGGTTa < 6:178204/148‑1 (MQ=255) cAATGAAGAGCAAGAGCAGAAGCTTGATCTGTGTAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCACGAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTa < 1:286023/149‑1 (MQ=255) cAATGAAGAGCAAGAGCAGAAGCTTGATCTGTGTAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAg < 1:347014/149‑1 (MQ=255) aaTGAAGAGCAAGAGCAGAAGCTTGATCTGTGTAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGt > 4:120346/1‑149 (MQ=255) agagcaGAAGCTTGATCTGTGTAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGat < 1:254473/149‑1 (MQ=255) gAAGCTTGATCTGTGTAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGa > 6:70401/1‑149 (MQ=255) aGCTTGATCTGTGTAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGAt < 3:9353/148‑1 (MQ=255) aGCTTGATCTGTGTAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATa < 1:73525/149‑1 (MQ=255) tgtAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATgg < 5:70401/146‑1 (MQ=255) tgtAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCt < 3:120346/148‑1 (MQ=255) tAAAATTAATTTTTATAAATGAACATCCTGATAGTTAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCTATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGATTGGGTTAGTTGTCAA‑GTGATATCTGa < 2:317171/134‑1 (MQ=255) tAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCATGAAGGAACGTCA‑GAAACCGAAATTCCAGAGGGAGCGTAAGAGACA‑‑AAGACTCTTATGGTAGTGGGTTAGTTGTCAA‑GTGATATATGa > 1:317171/1‑134 (MQ=255) aaaTTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATg < 7:256160/149‑1 (MQ=255) ttattaTAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACATCTAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGtt < 1:295197/149‑1 (MQ=255) ttatAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACAt < 3:48339/149‑1 (MQ=255) aTCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTGCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGt < 1:146544/95‑1 (MQ=255) aTCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCaa < 4:77450/149‑1 (MQ=255) aTCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCaa > 1:301965/1‑149 (MQ=255) aTCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCaa > 1:175115/1‑149 (MQ=255) aTCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCa > 8:336544/1‑148 (MQ=255) aaCATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACtt < 5:123989/149‑1 (MQ=255) aaCATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACtt < 4:213381/149‑1 (MQ=255) aaCATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACt < 3:340958/148‑1 (MQ=255) cTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGtt > 6:308320/1‑148 (MQ=255) tGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGt > 5:274286/1‑140 (MQ=255) tGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGt < 6:274286/140‑1 (MQ=255) tGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTg > 5:249192/1‑148 (MQ=255) tGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTg > 7:129618/1‑148 (MQ=255) tGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTg > 7:158995/1‑148 (MQ=255) tGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGc < 7:83928/149‑1 (MQ=255) gAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCa > 3:206277/1‑149 (MQ=255) aaGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCAt > 3:168813/1‑149 (MQ=255) aGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCAtt > 1:305699/1‑149 (MQ=255) gtgtTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTg < 3:144177/149‑1 (MQ=255) tgtTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTc < 7:298042/82‑1 (MQ=255) tgtTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTc > 8:298042/1‑82 (MQ=255) ttGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑Gt < 4:302754/84‑1 (MQ=255) ttGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑Gt > 3:302754/1‑84 (MQ=255) ttGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATa < 2:301965/149‑1 (MQ=255) ttGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATa > 5:202626/1‑149 (MQ=255) aCGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGAt > 4:250268/1‑141 (MQ=255) aCGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGAt < 3:250268/141‑1 (MQ=255) ggTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCtgt < 6:249192/149‑1 (MQ=255) ggTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCtgt < 8:129618/149‑1 (MQ=255) gTACCTCA‑GAAACCGCAATTCAAATGGGAGAGTAAGAGAAA‑‑AACTATCTTATGGCACTGGTATACTTCTCCA‑GTGATATCTGATAGCCGATGCATACATGAGGTTGAAATAGTCAAATTGAGTATACCGTGCATTGATAGACTTCtat > 4:149912/1‑146 (MQ=255) tACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCtgtg > 2:325251/1‑148 (MQ=255) tCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCt < 8:215181/141‑1 (MQ=255) tCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCt > 7:215181/1‑141 (MQ=255) cA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTCCGTTTACCGTGCATTGATAGAGTTATGTGAAGaaa > 7:306962/1‑149 (MQ=255) a‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCTGTGCAGAAAt > 7:297569/1‑149 (MQ=255) cGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCTGTGCAGAAATCCGTCa < 7:336544/149‑1 (MQ=255) gCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCTGTGCAGAAATCCGTCAc > 1:267707/1‑149 (MQ=255) gCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCTGTGCAGAAATCCGTCAc > 7:138549/1‑149 (MQ=255) ccAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAATGTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCTGTGCAGAAATCCGTCACTTGa > 1:91296/1‑148 (MQ=255) ccAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATAGCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCTGTGCAGAAATCCGTCACTTGaa < 8:158995/148‑1 (MQ=255) tGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCTGTGCAGAAATCCGTCACTTGAAAtgtg < 2:267707/149‑1 (MQ=255) ggAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCTGTGCAGAAATCCGTCACTTGAAATGTgg < 4:168813/148‑1 (MQ=255) gAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCTGTGCAGAAATCCGTCACTTGAAATGTGGc < 5:189547/148‑1 (MQ=255) gAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCTGTGCAGAAATCCGTCACTTGAAATGTGGc > 6:189547/1‑148 (MQ=255) gTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCTGTGCAGAAATCCGTCACTTGAAATGTGGCTCAAg > 2:171240/1‑149 (MQ=255) atAAGAGACT‑‑TTGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCTGTGCAGAAATcc < 2:79114/126‑1 (MQ=255) atAAGAGACT‑‑TTGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTATGTGCAGAAATcc > 1:79114/2‑127 (MQ=255) tAAGAGACA‑‑AACTCTCATATGGGAGTGGCTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCTGTGCAGAAATCCGTCACTTGAAATGTGGCTCAAgg > 6:341895/1‑149 (MQ=255) agagACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCTGTGCAGAAATCCGTCACTTGAAATGTGGCTCAAGGc > 3:305755/1‑148 (MQ=255) gaCA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCTGTGCAGAAATCCGTCACTTGAAATGTGGCTCAAGGCCATg < 2:91296/149‑1 (MQ=255) gaCA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCTGTGCAGAAATCCGTCACTTGAAATGTGGCTCAAGGCCATg < 8:138549/149‑1 (MQ=255) aCA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCTGTGCAGAAATCCGTCACTTGAAATGTGGCTCAAGGCCATg < 7:55788/148‑1 (MQ=255) aCA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCTGTGCAGAAATCCGTCACTTGAAATGTGGCTCAAGGCCATg > 8:55788/1‑148 (MQ=255) aGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCTGTGCAGAAATCCGTCACTTGAAATGTGGCTCAAGGCCATGGAATa > 4:349644/1‑149 (MQ=255) | AGATTGCGCTATGTCCTACGGACAATGAAGAGCAAGAGCAGAAGCTTGATCTGTGTAAAATTAATTATTATAAATCAACATCCTGATAGTGAAGTGTTGCCTGACGGTACGTCA‑GAAACCGCAATTCCAGTGGGAGCGTAAGAGACA‑‑AAGTCTCTTATGGGAGTGGGTTAGTTGTCAA‑GTGATATCTGATAGCCGATGGCTACATGAGGTTGACATTGTCAACTTGCGTTGACCGTGCATTGATAGAGTTCTGTGCAGAAATCCGTCACTTGAAATGTGGCTCAAGGCCATGGAATA > NC_002947/1278336‑1278632 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |