Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,359,141 | T→C | 7.5% | intergenic (‑9/+73) | PP_1183 ← / ← PP_1184 | siderophore biosynthesis protein/dienelactone hydrolase family protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,359,141 | 0 | T | C | 7.5% | 150.4 / 2.9 | 53 | intergenic (‑9/+73) | PP_1183/PP_1184 | siderophore biosynthesis protein/dienelactone hydrolase family protein |
Reads supporting (aligned to +/- strand): ref base T (27/22); new base C (2/2); total (29/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.52e-01 |
ATACCGGCGCGCTGGAAGTCGTCGGTTGCCAGGTGGGCAGGGTCGAAGGCGCAACTGACCAGCACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAACACCTTCTTGAAGAACGCCTGCATATCTGCCCAGGAACGCTCGTCCGCTGCCTTGTTATAGCCAAT > NC_002947/1358996‑1359288 | aTACCGGCGCGCTGGAAGTCGTCGGTTGCCAGGTGGGCAGGGTCGAAGGCGCAACTGACCAGCACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATtgt < 4:48159/149‑1 (MQ=255) tACCGGCGCGCTGGAAGTCGTCGGTTGCCAGGTGGGCAGGGTCGAAGGCGCAACTGACCAGCACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATtgtg > 4:289587/1‑149 (MQ=255) cGGCGCGCTGGAAGTCGTCGGTTGCCAGGTGGGCAGGGTCGAAGGCGCAACTGACCAGCACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGc > 4:287663/1‑147 (MQ=255) ggCGCGCTGGAAGTCGTCGGTTGCCAGGTGGGCAGGGTCGAAGGCGCAACTGACCAGCACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTACTGTGCCAg > 5:119958/1‑149 (MQ=255) ggCGCGCTGGAAGTCGTCGGTTGCCAGGTGGGCAGGGTCGAAGGCGCAACTGACCAGCACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTACTGTGCCAg > 5:114744/1‑149 (MQ=255) gccgcgcTGGAAGTCGTCGGTTGCCAGGTGGGCAGGGTCGAAGGCGCAACTGACCAGCACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAg < 8:187867/147‑1 (MQ=255) gcgcgcTGGAAGTCGTCGGTTGCCAGGTGGGCAGGGTCGAAGGCGCAACTGACCAGCACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGc > 5:364846/1‑149 (MQ=255) ggAAGTCGTCGGTTGCCAGGTGGGCAGGGTCGAAGGCGCAACTGACCAGCACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCt > 8:121000/1‑143 (MQ=255) ggAAGTCGTCGGTTGCCAGGTGGGCAGGGTCGAAGGCGCAACTGACCAGCACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCt < 7:121000/143‑1 (MQ=255) gtcgtcGGTTGCCAGGTGGGCAGGGTCGAAGGCGCAACTGACCAGCACCGCGCCGGGCAATGGACGGGGCAGGTG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGgcgc > 8:140476/1‑149 (MQ=255) tcgtcgGTTGCCAGGTGGGCAGGGTCGAAGGCGCAACTGACCAGCACCGCGCCGGGCAATGGACGGGGCAGGTG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGgcgc < 7:140476/148‑1 (MQ=255) cgtcgGTTGCCAGGTGGGCAGGGTCGAAGGCGCAACTGACCAGCACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCt > 8:326115/1‑148 (MQ=255) gCCAGGTGGGCAGGGTCGAAGGCGCAACTGACCAGCACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGt > 1:293039/1‑149 (MQ=255) ccAGGTGGGCAGGGTCGAAGGCGCAACTGACCAGCACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCCAAGGGAGGt < 4:158749/148‑1 (MQ=255) cAGGGTCGAAGGCGCAACTGACCAGCACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGTTGGCGTGTTac > 7:294992/1‑148 (MQ=255) aGGGTCGAAGGCGCAACTGACCAGCACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCTGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAAc < 5:202529/149‑1 (MQ=255) aaGGCGCAACTGACCAGCACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGcctcct > 7:244576/1‑149 (MQ=255) cAACTGACCAGCACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTACTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCca < 6:119958/149‑1 (MQ=255) cAACTGACCAGCACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTACTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCca < 6:114744/149‑1 (MQ=255) aaCTGACCAGCACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCcac < 1:63761/149‑1 (MQ=255) aCCAGCACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGa > 5:263625/1‑149 (MQ=255) ccAGCACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGAt > 8:131954/1‑149 (MQ=255) ccAGCACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGAt < 1:314740/149‑1 (MQ=255) cctgcccGCGGCGGGGAATGGCCGGGGGAGGGGCCCTGTG‑‑GGGCGGTTCGGGGGGGCTGCTGG‑GGGTACTGTGTTCATGGGCGGCTTTTGTG‑CATCTGGGGATGGGGTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGAtt < 8:294992/144‑1 (MQ=255) cAGCACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGAtt > 3:78588/1‑149 (MQ=255) cAGCACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGAtt < 6:175764/149‑1 (MQ=255) gCAACGCGGCGGGGAATGGACGGGGCAGGGG‑CCAGTGCACTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGAtt < 1:124059/149‑1 (MQ=255) cACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGca < 3:289587/149‑1 (MQ=255) ccGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGGTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGAGTGGTAACGCCTCCTTTCCCACAACGATTGcaca > 8:281124/1‑149 (MQ=255) cGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCttt < 7:326115/149‑1 (MQ=255) gCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTAt < 8:244576/149‑1 (MQ=255) tGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTg > 3:206992/1‑148 (MQ=255) gACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGaa < 7:64568/148‑1 (MQ=255) aCGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAATTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAaca > 4:45879/1‑149 (MQ=255) gCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGAGTGCACAATCTTTTATTTGACCACcttc > 2:76769/1‑149 (MQ=255) cAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAACACcttct < 6:364846/149‑1 (MQ=255) aGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAACACcttctt > 3:98545/1‑149 (MQ=255) gggg‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAACACcttctt > 3:114328/1‑148 (MQ=255) gtgCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAACACCTTCTTGAAGAACGCCt < 4:114328/149‑1 (MQ=255) ggAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAac < 3:93072/125‑1 (MQ=255) ggAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAac > 4:93072/1‑125 (MQ=255) gAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAACACCTTCTTGAAGAACGCCTGCatat > 3:345689/1‑149 (MQ=255) gAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAACACCTTCTTGAAGAACGCCTGCata > 8:299994/1‑148 (MQ=255) gggCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAACACCTTCTTGAAGAACGCCTGCATATCTGc > 3:216778/1‑148 (MQ=255) ggAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAACACCTTCTTGAAGAACGCCTGc < 1:42232/126‑1 (MQ=255) ggAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAACACCTTCTTGAAGAACGCCTGc > 2:42232/1‑126 (MQ=255) aaGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAACACCTTCTTGAAGAACGCCTGCATATCTGCCCAGGAACGCTCGTCCg < 4:216778/149‑1 (MQ=255) ttCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAACACCTTCTTGAAGAACGCCTGCATATCTGCCCAGGAACGCTCGTCCGCTGCCtt > 3:10728/1‑149 (MQ=255) gcggcTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAACACCTTCTTGAAGAACGCCTGCATATCTGCCCAGGAACGCTCGTCCGCTGCCTTGTtata < 4:10728/149‑1 (MQ=255) gcggcTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAACACCTTCTTGAAGAACGCCTGCATATCTGCCCAGGAACGCTCGTCCGCTGCCTTGTtata < 5:152914/149‑1 (MQ=255) ggcTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAACACCTTCTTGAAGAACGCCTGCATATCTGCCCAGGAACGCTCGTCCGCTGCCTTGTTATAGc > 7:22676/1‑149 (MQ=255) aTTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAACACCTTCTTGAAGAACGCCTGCATATCTGCCCAGGAACGCTCGTCCGCTGCCTTGTTATAGCCAAt > 1:293186/1‑149 (MQ=255) aTTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAACACCTTCTTGAAGAACGCCTGCATATCTGCCCAGGAACGCTCGTCCGCTGCCTTGTTATAGCCAAt > 8:312933/1‑149 (MQ=255) ttGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAACACCTTCTTGAAGAACGCCTGCATATCTGCCCAGGAACGCTCGTCCGCTGCCTTGTTATAGCCaa < 7:131954/147‑1 (MQ=255) | ATACCGGCGCGCTGGAAGTCGTCGGTTGCCAGGTGGGCAGGGTCGAAGGCGCAACTGACCAGCACCGCGCCGGGCAATGGACGGGGCAGGGG‑CCAGTG‑‑GTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCAT‑GGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAACACCTTCTTGAAGAACGCCTGCATATCTGCCCAGGAACGCTCGTCCGCTGCCTTGTTATAGCCAAT > NC_002947/1358996‑1359288 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |