| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 195,559 | C→A | 25.9% | T355T (ACC→ACA) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,559 | 0 | C | A | 25.9% | 192.0 / 66.8 | 104 | T355T (ACC→ACA) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (40/37); new base A (14/13); total (54/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.05e-01 | |||||||||||
Only 100 of 109 total aligned reads displayed.
CCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACC > NC_002947/195412‑195707 | ccAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACcg > 5:287565/1‑149 (MQ=32) cAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACcgg < 2:124196/149‑1 (MQ=32) gACGCCGGTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACcggcg < 7:20830/149‑1 (MQ=32) gACGCCGGTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACcggcg < 2:22837/149‑1 (MQ=32) ggTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAAtt < 4:185834/149‑1 (MQ=35) gtgaccgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAAttt > 3:78305/1‑149 (MQ=37) accgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGa < 4:152980/149‑1 (MQ=34) accgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGa < 5:221862/149‑1 (MQ=34) accgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGa < 5:282235/149‑1 (MQ=34) accgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGa < 2:179516/149‑1 (MQ=34) cgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCAACATCGAGAACGCCACCGGCGGTAATTTCGAg > 2:281503/1‑148 (MQ=25) gtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGc > 2:130211/1‑148 (MQ=35) tgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCaa < 5:227337/149‑1 (MQ=38) ccTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGa > 3:19344/1‑149 (MQ=39) ccTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGa > 2:344490/1‑149 (MQ=39) ccTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTAACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGa > 6:20812/1‑149 (MQ=255) tGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGCC‑CCCGGCCAATGAAGTCTACAACAACGGTTAGACCGTCAGA‑GTCACCCTCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAcc > 5:280986/1‑149 (MQ=14) ccAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAcccc < 1:130211/148‑1 (MQ=39) cAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTc > 2:233011/1‑133 (MQ=34) cAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTc < 1:233011/133‑1 (MQ=34) gCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑ACCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATcc > 5:67188/1‑148 (MQ=255) ccAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCAAGCAACTGACCCCGAATCCGa > 1:328661/1‑149 (MQ=255) cAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAc < 6:67188/149‑1 (MQ=255) gTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAcccc > 7:115452/1‑149 (MQ=255) tcatcaCTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGc > 5:239225/1‑126 (MQ=37) tcatcaCTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGc < 6:239225/126‑1 (MQ=37) aCTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAccc < 6:238929/142‑1 (MQ=39) aCTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCa > 2:356387/1‑149 (MQ=39) tGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGa > 7:183597/1‑149 (MQ=38) tGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGa > 7:57412/1‑149 (MQ=38) aGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGa < 8:183597/149‑1 (MQ=37) ggCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCaa < 4:78305/149‑1 (MQ=37) gCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCTGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc < 5:20812/149‑1 (MQ=37) aaaaCCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGa > 8:247390/1‑149 (MQ=37) aCCCAGGGCAGCGTCGATTTCCAGACGCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACt > 1:192050/1‑149 (MQ=21) aCCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTc < 1:327661/149‑1 (MQ=34) ggCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACATCGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGa < 3:232885/149‑1 (MQ=21) ggCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCGCAGACCACCATCAACGACTCGGTCGa < 4:19344/149‑1 (MQ=21) aTTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACaccaccacc > 7:179533/1‑149 (MQ=39) tCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCAAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACcgc < 2:328661/148‑1 (MQ=255) ccAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTc < 7:1753/133‑1 (MQ=34) ccAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTc > 8:1753/1‑133 (MQ=34) ccAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACcgcca > 3:352054/1‑147 (MQ=39) aGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAcc > 2:88738/1‑149 (MQ=39) ccGGCCAATGACGTCGACAACAACGGGGCGACCGTCAGC‑GTCACCATCGAGCACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGAc < 6:280986/149‑1 (MQ=255) cGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGT‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACg > 6:278378/1‑149 (MQ=255) cGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACg < 8:115452/149‑1 (MQ=39) gCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGc < 1:88738/149‑1 (MQ=39) cAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGa < 4:348849/149‑1 (MQ=38) aaTGACGTCTACAACAACGGTTCGACCGTCAGCGGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGGTCAGACCACGATCAACGCCTCGGTCGACACCCCCACCGCGACCCTGACGGc > 1:235986/1‑147 (MQ=11) aTGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGa < 1:314422/147‑1 (MQ=17) tGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGa < 8:118325/134‑1 (MQ=37) tGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGa > 7:118325/1‑134 (MQ=37) tcGTCTACAACTACGGGTCGACCGGCTGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGATTCCGACCCCGGCTCAGACCACTATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCTAGccc < 4:352054/147‑1 (MQ=11) aCGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCg > 4:22883/1‑149 (MQ=17) gTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTc > 4:355937/1‑149 (MQ=17) tCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGc < 2:114245/139‑1 (MQ=17) tCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGc > 1:114245/1‑139 (MQ=17) acaacaACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCGCGAATCCGACCCCGGCTCAGACGACGATCAACGACTCGGTCGACACCACCCCCGCGACCCTGACGGCGAGCCCGTCGGt > 6:111001/1‑148 (MQ=255) acaacaACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGt > 3:171220/1‑148 (MQ=37) caacaaCGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCa > 3:123636/1‑149 (MQ=17) aacaacGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 5:274561/1‑149 (MQ=37) acaacGGTTCGACAGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAAATTCGAGCAACTGCCCCCGAATCCGACACCGGCTCAGACCACGATCAACGCCTCGGTCGACACCACCACCGCGCCCCTGCCGGCGAGCCCGACCGTCAcc > 4:137772/1‑149 (MQ=11) caacGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCg < 5:48862/142‑1 (MQ=17) caacGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAACCCGGCTCAGACCACGATCAACGACTCGGTCTACACCACTACCGCGACCCTGACGCCCAGCACGtag > 6:48862/1‑140 (MQ=11) aacGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGa < 6:181321/133‑1 (MQ=17) aacGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGa > 5:181321/1‑133 (MQ=17) gACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAcacc < 4:304098/103‑1 (MQ=38) gACCGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg > 4:111843/1‑149 (MQ=17) gACCGTAATC‑GTCAACATCGATAAAGCCACCGGCTGTAATTTCGATCAACTTCACCCGAATCCGTCCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg < 7:137017/149‑1 (MQ=11) aCCGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 2:254388/1‑149 (MQ=17) aCCGTCAGC‑GGCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGTCTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt < 8:105377/149‑1 (MQ=255) ccGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTg < 8:57412/149‑1 (MQ=38) cGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAAGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGa < 5:63944/149‑1 (MQ=12) aGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa < 7:247390/148‑1 (MQ=39) aGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCAc < 2:235986/149‑1 (MQ=39) aGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCAc < 3:22883/149‑1 (MQ=17) gC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt < 3:355937/149‑1 (MQ=17) c‑GTCACCATCGAGAACGCCACCGGCGGTAATTTTGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTAGGTCGACAACACCACCGCGACCCTGACGTCGACCCCGTCGGTCACAGAAGGCGGCGAGATCAca > 4:29327/1‑147 (MQ=11) c‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt > 5:250234/1‑148 (MQ=38) tCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTa > 1:26744/1‑148 (MQ=17) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTacac > 3:64766/1‑149 (MQ=17) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 7:203031/1‑149 (MQ=39) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 8:310870/1‑138 (MQ=17) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt < 7:310870/138‑1 (MQ=17) aTCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 8:282114/1‑149 (MQ=39) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc > 6:252864/1‑132 (MQ=17) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 5:252864/132‑1 (MQ=17) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt < 5:23242/149‑1 (MQ=17) tCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 3:182109/1‑148 (MQ=39) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAc < 3:111843/149‑1 (MQ=17) agaACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACTCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc < 1:281503/149‑1 (MQ=255) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGCCCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCGCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc > 5:304739/1‑149 (MQ=255) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc < 2:122506/149‑1 (MQ=17) cGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 1:344490/149‑1 (MQ=39) cGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 6:274561/149‑1 (MQ=39) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAg < 4:128245/149‑1 (MQ=17) cACCGGCGGTAATTTCGAGCAACTGACCCCGAAACCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 1:146539/1‑123 (MQ=38) aCCTGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTAGGTCGACACAACCACCGCGACCCTGACGGCGAGCCAGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTCAGCaa > 6:189471/1‑149 (MQ=11) cggcggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc < 6:250234/149‑1 (MQ=39) | CCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAC‑CCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACC > NC_002947/195412‑195707 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |