| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 195,628 | C→T | 8.1% | D378D (GAC→GAT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,628 | 0 | C | T | 8.1% | 286.4 / 12.4 | 111 | D378D (GAC→GAT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (50/52); new base T (5/4); total (55/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.42e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.86e-02 | |||||||||||
Only 100 of 115 total aligned reads displayed.
ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAA > NC_002947/195489‑195773 | aTTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑accaccacc > 7:179533/1‑149 (MQ=39) tCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCAAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACcgc < 2:328661/148‑1 (MQ=255) ccAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACcgcca > 3:352054/1‑147 (MQ=39) ccGGCCAATGACGTCGACAACAACGGGGCGACCGTCAGC‑GTCACCATCGAGCACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGAc < 6:280986/149‑1 (MQ=255) cGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGT‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACg > 6:278378/1‑149 (MQ=255) cGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACg < 8:115452/149‑1 (MQ=39) aaTGACGTCTACAACAACGGTTCGACCGTCAGCGGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGGTCAGACCACGATCAACGCCTCGGTCGAC‑ACCCCCACCGCGACCCTGACGGc > 1:235986/1‑147 (MQ=11) aTGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGa < 1:314422/147‑1 (MQ=17) tGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGa > 7:118325/1‑134 (MQ=37) tGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGa < 8:118325/134‑1 (MQ=37) tcGTCTACAACTACGGGTCGACCGGCTGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGATTCCGACCCCGGCTCAGACCACTATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCTAGccc < 4:352054/147‑1 (MQ=11) aCGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCg > 4:22883/1‑149 (MQ=17) gTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTc > 4:355937/1‑149 (MQ=17) tCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGc > 1:114245/1‑139 (MQ=17) tCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGc < 2:114245/139‑1 (MQ=17) acaacaACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCGCGAATCCGACCCCGGCTCAGACGACGATCAACGACTCGGTCGAC‑ACCACCCCCGCGACCCTGACGGCGAGCCCGTCGGt > 6:111001/1‑148 (MQ=255) acaacaACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGt > 3:171220/1‑148 (MQ=37) caacaaCGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCa > 3:123636/1‑149 (MQ=17) aacaacGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 5:274561/1‑149 (MQ=37) acaacGGTTCGACAGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAAATTCGAGCAACTGCCCCCGAATCCGACACCGGCTCAGACCACGATCAACGCCTCGGTCGAC‑ACCACCACCGCGCCCCTGCCGGCGAGCCCGACCGTCAcc > 4:137772/1‑149 (MQ=11) caacGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCg < 5:48862/142‑1 (MQ=17) caacGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAACCCGGCTCAGACCACGATCAACGACTCGGTCTAC‑ACCACTACCGCGACCCTGACGCCCAGCACGtag > 6:48862/1‑140 (MQ=11) aacGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGCC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 8:57859/1‑148 (MQ=12) aacGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGa < 6:181321/133‑1 (MQ=17) aacGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGa > 5:181321/1‑133 (MQ=17) gACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAc‑acc < 4:304098/103‑1 (MQ=38) gACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAc‑acc > 3:304098/1‑103 (MQ=38) gACCGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg > 4:111843/1‑149 (MQ=17) gACCGTAATC‑GTCAACATCGATAAAGCCACCGGCTGTAATTTCGATCAACTTCACCCGAATCCGTCCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg < 7:137017/149‑1 (MQ=11) aCCGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 2:254388/1‑149 (MQ=17) aCCGTCAGC‑GGCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGTCTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt < 8:105377/149‑1 (MQ=255) ccGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTg < 8:57412/149‑1 (MQ=38) cGTCAGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAAGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGa < 5:63944/149‑1 (MQ=12) aGC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCAc < 3:22883/149‑1 (MQ=17) gC‑GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt < 3:355937/149‑1 (MQ=17) c‑GTCACCATCGAGAACGCCACCGGCGGTAATTTTGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTAGGTCGAC‑AACACCACCGCGACCCTGACGTCGACCCCGTCGGTCACAGAAGGCGGCGAGATCAca > 4:29327/1‑147 (MQ=11) c‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt > 5:250234/1‑148 (MQ=38) tCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTa > 1:26744/1‑148 (MQ=17) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTacac > 3:64766/1‑149 (MQ=17) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 7:203031/1‑149 (MQ=39) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 8:310870/1‑138 (MQ=17) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt < 7:310870/138‑1 (MQ=17) aTCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 8:282114/1‑149 (MQ=39) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 5:252864/132‑1 (MQ=17) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt < 5:23242/149‑1 (MQ=17) tCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 3:182109/1‑148 (MQ=39) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAc < 3:111843/149‑1 (MQ=17) agaACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACTCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc < 1:281503/149‑1 (MQ=255) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGCCCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCGCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc > 5:304739/1‑149 (MQ=255) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc < 2:122506/149‑1 (MQ=17) cGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 1:344490/149‑1 (MQ=39) cGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 6:274561/149‑1 (MQ=39) cACCGGCGGTAATTTCGAGCAACTGACCCCGAAACCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 1:146539/1‑123 (MQ=38) aCCTGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTAGGTCGAC‑ACAACCACCGCGACCCTGACGGCGAGCCAGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTCAGCaa > 6:189471/1‑149 (MQ=11) cggcggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc < 6:250234/149‑1 (MQ=39) aggcggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAT‑GCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc < 1:69018/148‑1 (MQ=11) gcggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAT‑GCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCt > 5:6954/1‑149 (MQ=17) gcggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAT‑GCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCt < 1:130299/149‑1 (MQ=17) cggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAT‑GCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTg > 5:368793/1‑149 (MQ=17) aaTTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAT‑GCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGcc > 8:46718/1‑147 (MQ=17) ttCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCGCGATCAACGACTCGGTCGAT‑GCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGAc > 2:206332/1‑149 (MQ=12) ttCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGAc > 2:2386/1‑149 (MQ=39) tCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGAc < 2:26744/148‑1 (MQ=21) tCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGAc < 4:171220/148‑1 (MQ=39) gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa > 5:179995/1‑130 (MQ=17) gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 6:179995/130‑1 (MQ=17) gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAGCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGc < 3:137772/148‑1 (MQ=255) aGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCg < 2:50819/149‑1 (MQ=21) aGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCg < 1:2386/149‑1 (MQ=39) aaCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGc < 2:20863/136‑1 (MQ=40) aaCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGc > 1:20863/1‑136 (MQ=40) cTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCCACCCTGCCCAGACGCCGGTAAc > 5:379697/1‑149 (MQ=255) aCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAT‑GCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGt > 5:329954/1‑149 (MQ=12) aCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGt > 2:202189/1‑149 (MQ=255) aCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAAcc < 7:282114/147‑1 (MQ=40) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAT‑GCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGa < 6:344432/149‑1 (MQ=12) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa > 7:83175/1‑119 (MQ=17) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGac > 2:262058/1‑45 (MQ=32) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACGACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTg > 1:76994/1‑148 (MQ=255) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa < 1:254388/149‑1 (MQ=255) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAT‑GCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGacc < 2:133215/149‑3 (MQ=2) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa > 6:348164/1‑148 (MQ=255) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa < 5:348164/148‑1 (MQ=255) tCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGt > 3:146521/1‑149 (MQ=255) gACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTcc > 5:30661/1‑148 (MQ=255) aCCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGGCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGt < 5:189471/145‑1 (MQ=255) cccGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACg < 7:302339/149‑1 (MQ=38) ccGGCTCCGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACgg < 8:293065/149‑1 (MQ=255) gATCAACGACTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCg > 5:128940/1‑149 (MQ=255) aCGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTg > 2:309020/1‑147 (MQ=39) cGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc < 6:217659/82‑1 (MQ=33) gACTCGGTCGAC‑ACCACTACGGCGCCCCTGACGGCGAGCCCGGCGGTCACCGCAGGCGGCGTGATCTCTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAGTACCGTTGAAGc < 6:304739/149‑1 (MQ=14) gACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGc < 1:309020/149‑1 (MQ=39) cTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 4:123636/149‑1 (MQ=255) cTCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg > 6:8825/1‑149 (MQ=255) tCGGTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCggg > 7:247173/1‑149 (MQ=255) ggTCGAC‑ACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGa > 4:270085/1‑141 (MQ=255) ggTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGtt > 6:201650/1‑139 (MQ=40) ggTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGtt < 5:201650/139‑1 (MQ=40) gAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaaaa < 4:182109/148‑1 (MQ=39) | ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGC‑GTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAC‑ACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAA > NC_002947/195489‑195773 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |