Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,606,407 | A→T | 10.4% | intergenic (‑157/+54) | PP_1407 ← / ← PP_t64 | sulfate transporter/tRNA‑Gly |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,606,407 | 0 | A | T | 10.4% | 145.2 / 3.5 | 54 | intergenic (‑157/+54) | PP_1407/PP_t64 | sulfate transporter/tRNA‑Gly |
Reads supporting (aligned to +/- strand): ref base A (23/25); new base T (4/2); total (27/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.69e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTTTCACGAATCCAGTGAGCATATCCGCCACAAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCACTAAACTATACCCGCATCTGAGCTCGACTTTTT > NC_002947/1606269‑1606552 | gTTTCACGAATCCAGTGAGCATATCCGCCACAAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAAGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCtt < 5:64101/148‑1 (MQ=255) tttCACGAATCCAGTGAGCATATCCGCCACAAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCtttt > 3:184418/1‑149 (MQ=255) tttCACGAATCCAGTGAGCATATCCGCCACAAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTCGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCTTGGCTCCtttt > 8:261558/1‑149 (MQ=255) tCACGAATCCAGTGAGCATATCCGCCACAAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAATAAGGAGCCACGGCTCCTTTTGa > 4:305702/1‑149 (MQ=255) aCGAATCCAGTGAGCATATCCGCCACAAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACt > 2:339798/1‑149 (MQ=255) gAATCCAGTGAGCATATCCGCCACAAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGc > 4:195035/1‑149 (MQ=255) aaTCCAGTGAGCATATCCGCCACAAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCTTGGCTCCttttttcgttt < 7:261558/149‑8 (MQ=255) tCCAGTGAGCATATCCGCCACAAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGAt < 3:24989/149‑1 (MQ=255) cAGTGAGCATATCCGCCACAAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGTCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGa > 2:317617/1‑149 (MQ=255) gTGAGCATATCCGCCACAAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACg > 5:249835/1‑149 (MQ=255) tCCGCCACAAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACAGCGATTAAGttcatgcac > 6:258818/1‑142 (MQ=255) tCCGCCACAAGCCGGTTCGCTTTCGCACGCAAAGGCCCTATGCGCATTTAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGaa < 6:370538/149‑1 (MQ=255) ccACAAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGc > 4:77379/1‑148 (MQ=255) cGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGTCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGa < 1:317617/149‑1 (MQ=255) cGTTTCGCTGTCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGTCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGa < 8:277942/149‑1 (MQ=255) gTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGAc > 4:211754/1‑149 (MQ=255) gTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGAc > 4:355264/1‑149 (MQ=255) cTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGAt < 3:211754/149‑1 (MQ=255) cgcacgcaAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGAtgtg < 1:339798/148‑1 (MQ=255) acgcaAAGGCCCGATGCTCATTGAAGCGGATCGGTGGGTAATTGCCCATGCGCCAGGTCAAGGCCGGATGTAAAACGAAATAAGGAGGCAAGGCTCCTTTTGACTGGGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGTAGc < 5:258818/149‑1 (MQ=255) acgcaAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGc > 7:328164/1‑149 (MQ=255) gcaAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAGGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCgg > 6:218650/1‑149 (MQ=255) gcaAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCgg < 5:150956/149‑1 (MQ=255) cccGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAGGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAgg < 5:218650/149‑1 (MQ=255) cccGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAgg < 4:107021/149‑1 (MQ=255) aTTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGc < 8:187355/130‑1 (MQ=255) aTTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGc > 7:187355/1‑130 (MQ=255) aTTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAAcc < 2:52736/149‑1 (MQ=255) aaGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTc < 3:195035/148‑1 (MQ=255) aaGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTc < 6:249835/148‑1 (MQ=255) aGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGaa > 4:292718/1‑99 (MQ=255) aGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGaa < 3:292718/99‑1 (MQ=255) aTCGGTGGGTAATTGGCCATGGGCCAGGTCAAGTCAGGATGAAAAACGAAAAAAGGAGCCTAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTaaa < 1:262993/149‑1 (MQ=255) gTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCtt > 1:74875/1‑149 (MQ=255) gTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCtt < 8:232333/149‑1 (MQ=255) tGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTg < 8:132720/149‑1 (MQ=255) ggCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGtttt < 7:136862/148‑1 (MQ=255) ggCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTCCCAAGCTTTAGttgag < 4:184418/149‑4 (MQ=255) cAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCa < 3:355264/149‑1 (MQ=255) ggTCAAGGCAGGATGAAAAACGAAAAAAGGAGACAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCAc > 6:319297/1‑148 (MQ=255) gTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTCCCAAGCTTTAGt < 3:161016/139‑1 (MQ=255) gTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTCCCAAGCTTTAGt > 4:161016/1‑139 (MQ=255) aaGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCGTGGGAAGCTTTCGTTTTGCCAcgtaac > 4:234043/1‑144 (MQ=255) aGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGACCCCTCAACTAAAGCTTGGGACGCTTTCGTTGTGCGACTAAACTAGAc > 4:68552/1‑149 (MQ=255) aTGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCACTAAACTATACCCg > 5:302602/1‑149 (MQ=255) aaaCGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCACTAAACTATACCCGCATCt > 7:282372/1‑149 (MQ=255) aCGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCACTAAACTATACCCGCATCTGa < 6:302602/149‑1 (MQ=255) gAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGATTCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCACTAAACTATACCCGCATCTGAGc > 8:332876/1‑149 (MQ=255) gAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCACTAAACTATACCCGCATCTGAGc < 8:328164/149‑1 (MQ=255) aaaaGGAGCCTTGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCACTAAACTATACCCGCATCTGAGCTc > 3:263033/1‑148 (MQ=255) aaaaGGAGCCTTGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCACTAAACTATACCCGCATCTGAGCTc > 8:11614/1‑148 (MQ=255) aaGGAGCCTTGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCACTAAACTATACCCGCATCTGAGCTCGAc > 7:274751/1‑149 (MQ=255) aaGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCACTAAACTATACCCGCATCTGAGCTCGAc > 7:90076/1‑149 (MQ=255) gCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCACTAAACTATACCCGCATCTGAGCTCGACttttt < 5:319297/149‑1 (MQ=255) | GTTTCACGAATCCAGTGAGCATATCCGCCACAAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCACTAAACTATACCCGCATCTGAGCTCGACTTTTT > NC_002947/1606269‑1606552 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |