| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,639,596 | C→T | 11.0% | intergenic (‑186/‑125) | czcR‑III ← / → PP_1439 | response regulator/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,639,596 | 0 | C | T | 11.0% | 168.5 / 8.9 | 65 | intergenic (‑186/‑125) | czcR‑III/PP_1439 | response regulator/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (31/25); new base T (3/4); total (36/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.94e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.11e-01 | |||||||||||
TGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAATACCTGCTG > NC_002947/1639455‑1639744 | tGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGGGTAAACCCGTTCCTACAGGCGCGGGTTTACTCGCGAag < 6:146204/149‑1 (MQ=25) aCATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGGGTAAACCCGTTCCTACAGGCGCGGGTTTACTCGCGAaga < 3:19980/148‑1 (MQ=25) aCATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAagag < 3:233260/149‑1 (MQ=255) aCATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAACGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAagag < 3:49378/149‑1 (MQ=255) cATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAgg < 4:85431/149‑1 (MQ=255) tCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGc‑c < 5:93384/149‑1 (MQ=255) gTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGaa > 1:332955/1‑148 (MQ=255) tCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGaa > 4:149529/1‑147 (MQ=255) aaGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGt < 2:244264/149‑1 (MQ=255) aTGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTg > 1:358066/1‑147 (MQ=255) aTGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCa < 8:161886/149‑1 (MQ=255) taaaaatGGCCTGGGGTGAATTTAACGTTTTTTTAATTCTGCTGTTATGTGGCTGTGTGTTCGGGC‑CTCTTCGCTAGTAACCCCGCGCCTGTAGGAACGGTTTTACCCGCTAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAg < 2:332955/147‑1 (MQ=255) aaaaGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGGGTAAACCCGTTCCTACAGGCGCGGGTTTACTCGCGaa > 4:243700/1‑110 (MQ=18) aaaaGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGGGTAAACCCGTTCCTACAGGCGCGGGTTTACTCGCGaa < 3:243700/110‑1 (MQ=18) aaGGCCTGCGGTGCAGATAACGGATTTGTAATTATGCTGTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAAACCGCGACTGTAGGAACGGGTTTACACGCGAAGAGGC‑CCGAACAGTCAACACAAGGACACATTGCa > 5:337920/1‑142 (MQ=38) gTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTc > 4:321509/1‑113 (MQ=255) gTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTc < 3:321509/113‑1 (MQ=255) cAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTTATCCCCGCCTCa > 7:194240/1‑149 (MQ=255) aGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCAc > 8:292107/1‑149 (MQ=255) aaCGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCGCTCTTCGCGATTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCcaca > 1:256158/1‑110 (MQ=255) tttGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGt > 3:325403/1‑147 (MQ=255) tGTAATTCTGCTTTTATCTGGCTGTCTGTTCGGCC‑CTCTTCGCGAGAAAACCCCCGCCTGTAGCAACGGGTTAACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTTACCTTGCCGTTag < 7:193988/148‑1 (MQ=255) gTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCTCTCTTCGCGAGTAAACCAGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑ACGAACAGTCCAGACAAGGCCACATTGCAg > 1:50222/1‑117 (MQ=39) gTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGC‑CTCTTAGCGAGTAAACCCGCGCATGTAGGAAAGGGTTTACACGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAAACCACGCCTCACCTTGCCGTTagc > 5:228564/1‑148 (MQ=255) tAATTCTGCTGTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTagc > 4:322792/1‑147 (MQ=255) aaTTCTGCTGTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTagcca < 4:325403/148‑1 (MQ=255) ttCTGCTGTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCGCACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTagccagcc > 7:123296/1‑149 (MQ=255) ctgctgTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTACAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCt > 1:307108/1‑149 (MQ=255) gTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGc > 8:348894/1‑147 (MQ=255) ttATCTGGCTGTCTGTTCGGGC‑CAATTAGCGCGTAAACCCGCGCCGGTTGGGACGGGGTTTACCGCGCAGAGGC‑CCGCACACTGCCCACAAGGCCCCAATGCACGGCGGGAATACCCCCCGCCCCGTGCCGGTAGCCACCCCGCGCTAg > 2:156708/1‑149 (MQ=255) ggCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGc > 3:305717/1‑149 (MQ=255) gCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAg < 7:352495/142‑1 (MQ=255) gCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAg > 8:352495/1‑142 (MQ=255) gCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATgg < 3:304165/147‑1 (MQ=255) gCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATACCCGCCGCACCTTGCCGTTAGCCAGCCCGCGCTAGGATGGcc > 6:290752/1‑149 (MQ=255) tctgtTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAAGTGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGGTAGCCAGCCCTCGCTAGGATGGCCgt < 2:44784/147‑1 (MQ=255) tgtTCGGGC‑CTCTTCGCGATTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTa < 3:79817/135‑1 (MQ=255) tgtTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTa > 4:79817/1‑135 (MQ=255) tgtTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCt > 8:292971/1‑149 (MQ=255) ttCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCTAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTc < 3:149529/146‑1 (MQ=255) cGGCC‑CTCTTCGCCAGTAACCCCGCGCCTGTCGGACCGGTTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGAt < 1:156708/148‑1 (MQ=255) ggC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCgg > 5:80281/1‑149 (MQ=255) gC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGa > 6:28675/1‑86 (MQ=255) gC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGa < 5:28675/86‑1 (MQ=255) ctctTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGtta < 5:290752/149‑1 (MQ=255) tctTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTTCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGttat > 4:188484/1‑149 (MQ=255) tctTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGttat > 1:145161/1‑149 (MQ=255) cgcgAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGttatt < 7:292107/146‑1 (MQ=255) gcgAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTATGATGGCCGTGTCTGATCGGTTATTACGa < 5:6632/149‑1 (MQ=255) gggTAAACCCGTTCCTACAGGCGCGGGTTTACTCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGatg < 7:240470/147‑3 (MQ=37) gggTAAACCCGTTCCTACAGGCGCGGGTTTACTCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAgg > 8:240470/3‑149 (MQ=37) gggTAAACCCGTTCCTACAGGCGCGGGTTTACTCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATAGGTTATTACGAgg > 1:124917/3‑149 (MQ=37) aGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATT‑CGAGGCa < 2:358066/149‑1 (MQ=255) gTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGc > 8:98871/1‑148 (MQ=255) tAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCa > 3:222392/1‑148 (MQ=255) aaCCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAac < 4:222392/149‑1 (MQ=255) cccGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCGCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAaca > 1:65968/1‑149 (MQ=255) cccGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAacac > 2:364790/1‑149 (MQ=255) ccGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAacac > 3:131294/1‑148 (MQ=255) gcCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGa < 3:188484/149‑1 (MQ=255) cTGTCGGACCGGTTTTACCCGCTAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAAc < 8:194240/149‑1 (MQ=255) acaggcgcGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCt > 1:183242/8‑149 (MQ=255) aCGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCa > 8:151469/1‑148 (MQ=255) gggTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAAt < 7:98871/149‑1 (MQ=255) cggTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATAGCAGGACTGTAATCCCCGCCTCACCTAGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATGGGTTATTACGAGGCAAACACGATGAACCAGACCaaa > 6:109726/2‑148 (MQ=255) cccGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAATACctgct > 3:136106/1‑149 (MQ=255) ccGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGc < 1:202779/118‑1 (MQ=255) ccGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGaa > 1:164133/1‑130 (MQ=255) ccGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGaa < 2:164133/130‑1 (MQ=255) ccGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGCCCAAATACctgctg > 5:106468/1‑149 (MQ=255) ccGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGCCCAAATACctgctg > 5:244505/1‑149 (MQ=255) | TGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGC‑CTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGC‑CCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAATACCTGCTG > NC_002947/1639455‑1639744 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |