| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 58,747 | T→A | 8.4% | intergenic (‑658/+30) | PP_5424 ← / ← PP_0050 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 58,747 | 0 | T | A | 8.4% | 224.5 / 6.8 | 79 | intergenic (‑658/+30) | PP_5424/PP_0050 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (27/45); new base A (3/4); total (30/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTAGGGATTTCTCGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAGGTGGCGCGC > NC_002947/58605‑58890 | gTAGGGATTTCTCGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑Cg < 5:25715/149‑1 (MQ=255) ggATTTCTCGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCAGCAG‑‑CGGGCt > 2:224122/1‑149 (MQ=255) gATTTCTCGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCtt < 6:259205/149‑1 (MQ=255) gATTTCTCGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCtt < 2:105927/149‑1 (MQ=255) aTTTCTCGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTCCAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCAGCAG‑‑CGGGCttt < 5:261632/149‑1 (MQ=255) tttCTCGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCtttt < 5:131870/149‑1 (MQ=255) tttCTCGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCAGCAG‑‑CGGGCtttt < 2:38411/149‑1 (MQ=255) ttCTCGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCtttt < 7:25146/148‑1 (MQ=255) tctcGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCttttt < 1:39979/148‑1 (MQ=255) ctcGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTa < 6:22877/148‑1 (MQ=255) ctcGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTa < 6:195234/148‑1 (MQ=255) ggCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGc < 6:78478/149‑1 (MQ=255) ggCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCAGCAG‑‑CGGGCTTTTTA‑Gt < 1:224122/147‑1 (MQ=255) gCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCAGCAG‑‑CGGGCTTTTTA‑GTgtc < 3:127617/149‑3 (MQ=255) ttCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCACCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGc > 5:7686/1‑148 (MQ=255) tgtgAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCaaa > 2:290404/1‑148 (MQ=255) tgAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCaaa < 4:245411/146‑1 (MQ=255) gAAATGCACCCCTTCACTTCAAAAAAAAAATCGAGAAGCATCCAATTTCACGGGGTCTTGCCTATCACCTATTTTGTGAACCTACACCTTGTAATTCCCCAGACACTAAAACGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACaa < 4:275899/148‑1 (MQ=255) aaaaGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAAt < 5:313628/148‑1 (MQ=255) aaaGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAAt > 8:117682/1‑147 (MQ=255) aaaGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCa < 7:117682/149‑1 (MQ=255) cACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGACTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAg < 4:219183/149‑1 (MQ=255) aCCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGc > 2:335579/1‑149 (MQ=255) cccTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCg < 1:251803/149‑1 (MQ=255) cccTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCg > 8:3202/1‑149 (MQ=255) cccTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCAGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCg > 3:31936/1‑149 (MQ=255) tCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATACGCCAGACACTAAAAAGCCAGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATg > 7:124094/1‑149 (MQ=255) acaAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGtt > 3:70349/1‑149 (MQ=255) caAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTc < 8:155542/149‑1 (MQ=255) aaaaaaaaTGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCa < 8:333956/149‑1 (MQ=255) aaaaaaaTGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTAGGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCa < 1:66107/149‑1 (MQ=255) aaaaaaaTGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCAc < 8:199416/149‑1 (MQ=255) aaaaaaaTGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCAc > 4:97103/1‑149 (MQ=255) aaaaaaTGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑Gt < 3:81930/112‑1 (MQ=255) aaaaaaTGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑Gt > 4:81930/1‑112 (MQ=255) aGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAAACTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTTCTGACCGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGc < 1:290404/149‑1 (MQ=255) tCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATcaca > 6:34807/1‑139 (MQ=255) tCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATcaca < 5:34807/139‑1 (MQ=255) cAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAAt < 2:169021/148‑1 (MQ=255) cAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATg < 2:26782/149‑1 (MQ=255) cAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATg < 2:175518/149‑1 (MQ=255) aTTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCACCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGc < 6:7686/149‑1 (MQ=255) gggTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGaa < 3:97103/149‑1 (MQ=255) gggTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGaa < 7:3202/149‑1 (MQ=255) gggTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGaa < 6:253466/149‑1 (MQ=255) gTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACa < 4:70349/149‑1 (MQ=255) tCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCAc > 8:290769/1‑117 (MQ=255) tCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCAc < 7:290769/117‑1 (MQ=255) gCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTc < 1:335579/149‑1 (MQ=255) ccTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTc < 1:348767/148‑1 (MQ=255) cACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCAtt > 1:172342/1‑149 (MQ=255) aCCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCAtt > 7:171313/1‑148 (MQ=255) aCCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTc < 4:31936/149‑1 (MQ=255) ccTATATTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTca < 8:124094/149‑1 (MQ=255) cTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGt < 8:114825/139‑1 (MQ=255) cTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGt > 7:114825/1‑139 (MQ=255) cTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTca > 2:361904/1‑148 (MQ=255) ttttGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTcaca < 7:143505/147‑1 (MQ=255) ttttGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACAt > 1:358900/1‑148 (MQ=255) tgtgAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACa < 2:172342/148‑1 (MQ=255) tgtgAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAg > 6:205272/1‑149 (MQ=255) tgAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGcc < 1:361904/149‑1 (MQ=255) cAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATc < 2:258502/92‑1 (MQ=255) cAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTATTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATc > 1:258502/1‑92 (MQ=255) ggTGTAATTCGCCAGACACTAAAAAGCCCGGTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTc > 1:32108/1‑121 (MQ=255) ggTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTc < 2:32108/121‑1 (MQ=255) tAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATCACGAg > 8:65352/1‑149 (MQ=255) aTTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATCACGAGGt < 7:10980/149‑1 (MQ=255) gCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATc > 7:292226/1‑138 (MQ=255) gCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATc < 8:292226/138‑1 (MQ=255) gCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGGGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATCACCAGGTGgcg > 1:291318/1‑149 (MQ=255) ccAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGc > 7:185262/1‑112 (MQ=255) ccAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGc < 8:185262/112‑1 (MQ=255) tAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACATCCAAAGATGATCACGAGGTGGCGCATACAGGt > 7:20196/1‑149 (MQ=255) aaaaGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAgg < 6:200246/146‑1 (MQ=255) aaaaGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAgg > 5:200246/1‑146 (MQ=255) aaaaGCCCGCAGCAG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAGGTgg > 4:187756/1‑149 (MQ=255) gCCCGCAGCAG‑‑CGGGCTTTTTA‑GTGTCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAGGTGgcgcg > 5:157746/1‑149 (MQ=255) cccGCTGCTG‑‑CGGGCTTTTTA‑GTGGCTGCAAACAATCAGTAGCCGGTGAGAATGTTCGCGATCACACCGCTGGCAATGGCCAGCAGAACTTAGTCGCCAGGCGCATACAGCCAGCGATGATCACGAGGTGGCGCATACGGGTGgcgcgc > 4:198411/1‑149 (MQ=255) | GTAGGGATTTCTCGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTG‑‑CGGGCTTTTTA‑GTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCGCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAGGTGGCGCGC > NC_002947/58605‑58890 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |