| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,089 | T→C | 14.9% | N865N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,089 | 0 | T | C | 14.9% | 698.7 / 97.9 | 302 | N865N (AAT→AAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (133/123); new base C (26/19); total (160/142) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.19e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 303 total aligned reads displayed.
ACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACC > NC_002947/196941‑197233 | aCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAt < 1:146647/149‑1 (MQ=32) cAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACACGCGGTAATTTCGAGCAACTGACCCCGAATCCGAc > 2:314422/1‑149 (MQ=21) aaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAccc < 5:15454/149‑1 (MQ=35) aCCATTACCGTTGAAGCCGTCAAGACCCAGGGCAGCGTCTATTTCCAGACCCCGGCGAATGACGTCTACAAGAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACTGGCGGTAATTTCTAGCAACTGACCCCGAATCCGAcccc < 2:58709/149‑1 (MQ=11) cATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACAGTCAGCGTCTCCATCGAG‑‑‑ATC‑GCCACAGGCGGTAATTTCGAGAAACTGAGCCCGAATACGAccccag > 4:234516/1‑147 (MQ=11) aTTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGc > 7:101690/1‑149 (MQ=37) ttACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCt < 4:356506/149‑1 (MQ=37) aCCGTTGAAGCCGGCAAGACCCAGGTCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTc < 7:67227/148‑1 (MQ=37) aCCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTc < 7:169710/148‑1 (MQ=37) ccGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCt > 3:128245/1‑146 (MQ=37) ccGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCa < 6:368259/148‑1 (MQ=37) gTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGAc > 8:282701/1‑149 (MQ=37) ttGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGa < 1:130209/147‑1 (MQ=37) ttGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGa > 2:130209/1‑147 (MQ=37) aaGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAc > 1:352465/1‑148 (MQ=37) aaGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAc < 7:245667/148‑1 (MQ=37) aaGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAc < 4:154706/148‑1 (MQ=37) aaGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACg < 6:129532/149‑1 (MQ=37) ggCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCaa < 1:49349/149‑1 (MQ=37) gCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATc > 7:74867/1‑123 (MQ=34) gCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACg > 2:138307/1‑143 (MQ=37) gCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACg < 1:138307/143‑1 (MQ=37) gCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc < 4:55424/149‑1 (MQ=37) aaGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGa > 3:315890/1‑149 (MQ=37) gACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc > 2:44545/1‑145 (MQ=35) gACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACt > 1:93768/1‑149 (MQ=35) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCgg > 3:241246/1‑149 (MQ=34) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCgg > 1:67309/1‑149 (MQ=34) gCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGac < 2:52962/149‑2 (MQ=18) gCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGac < 7:282701/149‑2 (MQ=18) cAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAAGATCAAc < 1:175821/136‑1 (MQ=21) cAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAAGATCAAc > 2:175821/1‑136 (MQ=21) aGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGTG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGc < 5:169209/149‑1 (MQ=37) cGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGAt < 7:35883/129‑1 (MQ=35) cGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGAt > 8:35883/1‑129 (MQ=35) tCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAt < 4:201585/143‑1 (MQ=35) tCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGcccc > 7:267035/1‑146 (MQ=38) tCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAAGTTCGCGCAACTGCCCCCGAATCCGACCCCGGCTCAGACCCCGATCACCGCCTCGGTCGCTGccacc > 2:98397/1‑149 (MQ=11) gATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCcaccac > 8:74842/1‑149 (MQ=39) cAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAc > 7:30633/1‑149 (MQ=39) aGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAcc < 1:245325/149‑1 (MQ=39) gACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAccc > 3:85720/1‑149 (MQ=21) aCCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACcgc < 3:207277/143‑1 (MQ=39) aCCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCt < 5:12239/149‑1 (MQ=39) cccGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGa > 1:30031/1‑149 (MQ=21) cccGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGCTGCCACCACCGCGACCCTGa > 8:301582/1‑149 (MQ=255) gggAATTACTTCTACACCAACTGTTCGAGTGTCAGCGTCACAATCTAGCCTCCCTGCCACAGTCGGTAATTACGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGa < 1:119645/147‑1 (MQ=2) gCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGc < 3:335980/149‑1 (MQ=39) aaTGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAg > 5:264298/1‑149 (MQ=21) ccatcttCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGa < 3:301145/141‑1 (MQ=255) aCGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAcc < 3:196345/134‑1 (MQ=37) aCGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCg > 1:226699/1‑149 (MQ=37) cTACAACAACGGTTCGACCGTCAGCGTCGCCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATGAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCgg > 1:210917/1‑149 (MQ=255) cTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCTGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAt < 6:26927/115‑1 (MQ=18) tACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCgg > 8:157733/1‑148 (MQ=37) aacaacGGTTCGACTGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGc < 6:8107/134‑1 (MQ=21) aacaacGGTTCGACTGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGc > 5:8107/1‑134 (MQ=21) aacaacGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 2:72330/1‑149 (MQ=37) caacGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCGCGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 6:38940/1‑148 (MQ=37) caacGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGc < 6:241884/136‑1 (MQ=37) caacGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGt > 1:319007/1‑140 (MQ=37) caacGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGACACCACCGCGACCCTGACGGCGAGCCCGTCGGTCa > 6:346023/1‑146 (MQ=37) acGGTTCGACTGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGaa < 2:30031/149‑1 (MQ=21) acGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGaa < 8:30633/149‑1 (MQ=37) cGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCTCAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCGCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAg < 7:298457/149‑1 (MQ=255) ggTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAgg < 2:200059/149‑1 (MQ=37) gACTGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 5:361860/148‑1 (MQ=21) gACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCa > 1:280124/1‑86 (MQ=33) gACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg < 3:357672/149‑1 (MQ=37) aGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa < 8:316028/148‑1 (MQ=21) gCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCAcc < 4:257122/149‑1 (MQ=38) gCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCAcc > 4:75707/1‑149 (MQ=38) cATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCg > 6:187514/1‑149 (MQ=37) aTCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGTCGTAATCACCTACACCGt < 3:151303/149‑1 (MQ=37) aTCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 1:156429/1‑149 (MQ=17) aTCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGt > 5:292661/1‑149 (MQ=37) ag‑‑‑aAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACCCCGTGAcc > 7:301830/1‑149 (MQ=37) g‑‑‑aAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAGCGAAGGCGGCGTAATCCCCTACTCCGTGAccc > 6:311322/1‑149 (MQ=255) c‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 4:33857/149‑1 (MQ=37) c‑GCCACAGGCGGGAACTTCGAGCCACTGCCCCCGACCCCGACCCCGGCTCAGCCCACGATCAACGACTCGGGCGATGCCACCACCGCGCCCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 4:297267/149‑1 (MQ=11) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGTCCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAg < 2:268081/149‑1 (MQ=37) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCAcc < 2:150614/132‑1 (MQ=37) ccACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGc < 2:208112/149‑1 (MQ=17) aGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATc < 4:330178/149‑1 (MQ=35) aGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATc < 5:340262/149‑1 (MQ=25) gCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCt > 5:208812/1‑149 (MQ=34) ggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGc > 2:331036/1‑149 (MQ=34) gTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGCAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGcc > 2:351977/1‑149 (MQ=21) gagctccTGCCCACGAATCCTCCCCCGGCTCAGACCAGGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGc < 8:101181/142‑1 (MQ=11) gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa > 3:56121/1‑130 (MQ=35) gAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGcc > 8:247393/1‑149 (MQ=21) aaCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGt > 4:121461/1‑148 (MQ=34) aCTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGtga > 8:226616/1‑147 (MQ=14) cTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATc > 7:198935/1‑130 (MQ=35) cTGACCCCGAATCCGACCCCGGCTCAGACCAAGTTCAACGACTCGGTCGTTGCCACCACCGCTACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATc < 8:198935/130‑1 (MQ=255) tGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACAcc > 8:110286/1‑113 (MQ=17) tGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACAcc < 7:110286/113‑1 (MQ=17) ccccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 4:185748/120‑1 (MQ=35) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGAc > 2:221476/1‑149 (MQ=39) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGAc > 1:188586/1‑149 (MQ=39) | ACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAG‑‑‑AAC‑GCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACC > NC_002947/196941‑197233 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |