| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,590 | T→C | 23.6% | D1032D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,590 | 0 | T | C | 23.6% | 231.9 / 72.1 | 129 | D1032D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (49/48); new base C (13/17); total (64/65) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.36e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.11e-01 | |||||||||||
Only 100 of 129 total aligned reads displayed.
TGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACT > NC_002947/197445‑197737 | aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTcc < 1:16495/148‑1 (MQ=37) ggCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGa > 4:118467/1‑149 (MQ=37) cccGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCgg > 7:39225/1‑149 (MQ=37) cGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGc > 8:128093/1‑148 (MQ=37) ggTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGCTTAACCCTTACCCAGTC‑C‑AAAGGCCAAACCAATAACCTTGAAGCCGGGAAGACCCCAGGCAGCCTAGAATTACAGACCCCGGCGaaa > 1:290797/1‑148 (MQ=11) ggTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAt < 6:93666/148‑1 (MQ=37) gTCACCGAAGGCGGCGTGATCACCTACACAGTGATCCTGAACAATCCTGCCCAGACGCCT‑GTAACCGTGACCCTGTCTCGTACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAt < 1:299522/149‑1 (MQ=11) cACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTcc > 7:14688/1‑131 (MQ=37) cACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTcc < 8:14688/131‑1 (MQ=37) ccGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc < 4:364318/149‑1 (MQ=37) ggcggcGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTacaa > 4:174442/1‑149 (MQ=37) ggcgTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTAcaacaa < 5:250773/149‑1 (MQ=37) cgTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACg < 2:259192/149‑1 (MQ=37) aTCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 4:301260/148‑1 (MQ=37) aTCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 3:118467/148‑1 (MQ=37) ccTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCa < 6:32826/112‑1 (MQ=39) ccTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCa > 5:32826/1‑112 (MQ=39) ccTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGCATGACGTCTACAACAACGGTTCGACt < 1:198472/149‑1 (MQ=38) ccTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAcc < 2:218157/149‑2 (MQ=25) ccTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt < 3:155582/149‑1 (MQ=38) cTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAATCGTGACCCTGTC‑C‑AACGGCCAAACGATTACCGTTGAAGCCGGCAACACCCAGGGCAGCGTCGACTTCCAGa > 5:290800/1‑113 (MQ=14) cTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAATCGTGACCCTGTC‑C‑AACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGa < 6:290800/113‑1 (MQ=11) cTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa < 3:223348/132‑1 (MQ=37) cTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AAAGGCCAACCCATTACCGTTGAAGCCGGCAAGACCCCGGCCAGCCTCGATTTCCAGACCCCGGCGAATGAAGTCTACAACAACGGTTCGCCt > 7:269943/1‑148 (MQ=11) cGTGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑G‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGAGTTCCAGACCCCGGCGAATGACGTCTACAACAACCGTTCGACCGTCAGCg > 1:86352/1‑149 (MQ=255) cgatcgcTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGt < 3:67678/143‑1 (MQ=255) tGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGt > 6:227647/1‑148 (MQ=39) tGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTc < 3:180027/149‑1 (MQ=21) aTCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCa < 2:164748/148‑1 (MQ=38) tCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCAc < 1:35402/148‑1 (MQ=17) tCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCAGGCGAATGACGTCTACAACAACGGGTCGACCGTCAGCGTCAc > 6:12239/1‑148 (MQ=12) ccTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCa > 1:5695/1‑149 (MQ=37) cTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCa < 5:227647/148‑1 (MQ=37) cTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCAt > 5:174169/1‑149 (MQ=37) tGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATc > 5:236867/1‑149 (MQ=37) tGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATc > 7:2453/1‑149 (MQ=17) tGAGCAATCCTGCCCAGACGCCG‑GAAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATc > 2:231231/1‑149 (MQ=37) aGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATc < 7:128045/147‑1 (MQ=37) aGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATc > 8:332077/1‑147 (MQ=17) gCAATCCTGCCCAGACGCCG‑GTAACCGTGCCCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCAGGCGAATGACGTCTACAACAAAGGTTCGACTCTCAGCGTCACCATc > 5:173916/1‑146 (MQ=255) gCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATc > 2:17040/1‑146 (MQ=37) aaTCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa > 6:73024/1‑113 (MQ=35) aaTCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa < 5:73024/113‑1 (MQ=35) cTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGGCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACAAACGAGAACGcc > 6:380428/1‑149 (MQ=255) cccAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCca < 3:174442/147‑1 (MQ=17) ccAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCa < 3:244544/131‑1 (MQ=37) ccAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACACCGGCGAATGACGTCTACAACAAAGCTTCGACTGTCAGCGTCa > 4:244544/1‑131 (MQ=255) ccAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTACCAGACCCCGGCGAATGACCTCAACAACAACCCTTCGACTGTCAGCGTCACAATCGAGAACGCCACAg > 5:227043/1‑149 (MQ=11) cAGACGCCG‑GTGACCGTGACCCTGTC‑C‑AACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAgg < 7:24274/149‑1 (MQ=255) cAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAgg < 7:332077/149‑1 (MQ=17) gACGCCG‑GTGACCGTGACCCTGTC‑C‑AACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCg < 2:86146/149‑1 (MQ=255) gACGCCG‑GTGACCGTGACCCTGTC‑C‑AACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGGCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCg < 3:38349/149‑1 (MQ=11) gACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCg < 7:128093/149‑1 (MQ=17) gCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTa < 8:2453/149‑1 (MQ=17) tgaCCGTGACCCTGTC‑C‑AACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 4:261225/147‑1 (MQ=255) tAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTGAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc > 4:19702/1‑149 (MQ=25) tAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 2:290797/149‑1 (MQ=35) aCCGTGACCATGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 3:45381/149‑1 (MQ=21) tGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCaa < 6:110139/149‑1 (MQ=32) gACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAAc > 6:220067/1‑149 (MQ=32) aCCCTGTC‑C‑AACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACt > 7:336694/1‑149 (MQ=12) ccTGTC‑C‑AACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACt > 1:316258/1‑147 (MQ=12) ccTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa > 4:152306/1‑149 (MQ=32) tC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAcc < 1:17040/147‑1 (MQ=32) c‑AACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAgg < 6:336091/123‑1 (MQ=12) aaCGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 8:322020/132‑1 (MQ=12) aCGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAc < 2:177979/149‑1 (MQ=12) aCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAc > 4:98879/1‑149 (MQ=32) ggCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACCGATCGACTGTCAGCGTCACCAACCAGAACGCCCCAGGCGGTAAATTCGAGCAACTGACCCCGCAccc > 2:119645/1‑149 (MQ=11) gCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAccc > 2:338301/1‑148 (MQ=255) acgaTTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGAcccc < 8:336694/146‑1 (MQ=255) ccATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 3:190803/124‑1 (MQ=32) ccATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa > 4:190803/1‑124 (MQ=32) aTTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGc < 2:316258/149‑1 (MQ=12) ttACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTAGAACAACGGTTCGACTGACAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCCTGGGCGACGCCGGCt > 1:127536/1‑149 (MQ=11) cggTTGAAGCCTGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGGGAATGAAGTCTACAACAACGGTTCGACTGTCAGAGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCa < 6:227043/146‑1 (MQ=255) cGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGCACCCGACCCCGGCTCAGa > 3:297267/1‑149 (MQ=255) agTTGAAGACGGCAAGACACAGGGCAGCGTCTATTTCCAGACCCCGGCGAATGACGTCTACAACAACCGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATATCGAGCAACTCACCCCGAACCCGACGCCCGCTCAGa > 2:370338/2‑149 (MQ=11) gTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCACCTGACCCCGAACCCGACGCCGGCTCAGAc > 3:197653/1‑149 (MQ=37) aGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGa > 4:45081/1‑149 (MQ=12) ccGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATc < 5:220067/149‑1 (MQ=37) cAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGa > 4:23054/1‑125 (MQ=25) cAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGa < 3:23054/125‑1 (MQ=25) aaGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGa < 4:183611/149‑1 (MQ=39) aaGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGa > 1:26302/1‑149 (MQ=39) gACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACACGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACt > 6:67599/1‑149 (MQ=255) aCCCAGGGCAGCGTCGATTTCCGGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTc > 7:55108/1‑149 (MQ=255) aCCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTc > 4:224569/1‑149 (MQ=39) gcgaGGGCAGCGTCGATTTCCCTACCCCGGCGAATGACGTCTACAAGCTCGGTTCGCCTGTCAGCGGCACCATCGAGAACGCCTCAGGCGGTATTTTCTAGCATCTGACCCCGATCCCGACGCCGGCTCAGACCACGATCACCGACTCg < 8:269943/146‑1 (MQ=14) cAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGt > 1:88641/1‑149 (MQ=39) aGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAAGAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTc < 1:231231/149‑1 (MQ=255) aGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTc < 6:236867/149‑1 (MQ=39) aGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTc < 2:88641/149‑1 (MQ=39) ggCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGAAATAATTTCAAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGa > 1:303454/1‑149 (MQ=255) gCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTAACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGac < 4:219175/149‑1 (MQ=255) aGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGacac < 3:152306/149‑1 (MQ=39) cGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGAcacca > 8:14646/1‑149 (MQ=39) tCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCcac < 8:250400/73‑1 (MQ=34) tCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCcac > 7:250400/1‑73 (MQ=34) aTTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCactact < 3:19702/149‑1 (MQ=40) | TGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCG‑GTAACCGTGACCCTGTC‑C‑AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACT > NC_002947/197445‑197737 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |