| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 201,373 | T→C | 7.1% | T2293T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 201,373 | 0 | T | C | 7.1% | 199.9 / 4.4 | 70 | T2293T (ACT→ACC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (39/26); new base C (2/3); total (41/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.42e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01 | |||||||||||
AGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGACGCTGGCCAGAT > NC_002947/201225‑201516 | aGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACt < 5:164854/149‑1 (MQ=38) gAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCa > 3:243247/1‑149 (MQ=39) aacctgaacctgGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGt < 1:218976/149‑1 (MQ=39) acctgaacctgGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGt > 2:46161/1‑148 (MQ=39) aacctgGACAAGAACACGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGTCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAAt < 7:143219/147‑1 (MQ=255) cctgGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGc > 5:106236/1‑149 (MQ=255) ctgGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGcc < 6:216636/149‑1 (MQ=255) gACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACtgtg > 2:8570/1‑132 (MQ=40) gACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACtgtg < 1:8570/132‑1 (MQ=40) cAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTgg < 7:340918/149‑1 (MQ=255) cAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTgg > 7:202846/1‑149 (MQ=255) aaGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTgg > 4:93368/1‑148 (MQ=255) aaGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTgg < 3:93368/148‑1 (MQ=255) gACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGcc > 2:172719/1‑148 (MQ=255) cccGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGc > 1:328624/1‑140 (MQ=255) cccGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGc < 2:328624/140‑1 (MQ=255) cGGGCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGAC < 8:276955‑M1/149‑1 (MQ=255) tCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCT > 2:69318‑M1/1‑148 (MQ=255) gCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATc < 3:295038/149‑1 (MQ=255) aCTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTgg > 8:288733/1‑133 (MQ=255) aCTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTgg < 7:288733/133‑1 (MQ=255) aCTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGt > 6:118323/1‑149 (MQ=255) cTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGCTCGt > 6:254275/1‑148 (MQ=255) ccGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGAcc > 2:81838/1‑149 (MQ=255) ccAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGc > 5:264085/1‑149 (MQ=255) ccAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGc > 8:207591/1‑149 (MQ=255) aGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCt > 2:1205/1‑148 (MQ=255) aCTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAgg > 4:165357/1‑148 (MQ=255) tCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCa > 7:132124/1‑149 (MQ=255) atctcaacgAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGggcgttgttgctcagggtcacgaccaggtcgtg < 7:296745‑M1/145‑34 (MQ=255) gggcAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGggcgttgttgctcagggtcacgaccaggtcgtgg < 1:326165‑M1/148‑35 (MQ=255) ggCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCAt < 4:243247/149‑1 (MQ=255) aaCGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGggcgttgttgctcagggtcacgaccaggtcgtg > 8:296745‑M1/1‑111 (MQ=255) aaCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATc > 5:263275/1‑147 (MQ=255) aaCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCaa < 6:106236/149‑1 (MQ=255) aaCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCaa < 5:118323/149‑1 (MQ=255) gAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGc > 1:345611/1‑149 (MQ=255) cATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGaaa < 1:69318/149‑1 (MQ=255) tCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACACCGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAgc > 6:238995/1‑149 (MQ=255) tCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑c > 3:233601/1‑127 (MQ=255) tCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑c < 4:233601/127‑1 (MQ=255) tCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAgc < 1:1205/149‑1 (MQ=255) aaaGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTTAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAgcg > 2:223307/2‑149 (MQ=255) aaGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAgcgc > 8:39934/1‑149 (MQ=255) aGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAgcgcg > 2:232605/1‑149 (MQ=255) ggTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAgcgcgc > 7:226537/1‑149 (MQ=255) gTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACAGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAGCGCGcc > 4:318379/1‑149 (MQ=255) tCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACACCGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAGCGCGCCg > 6:348969/1‑149 (MQ=255) cACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCACGTCA‑CCATCAAGGCCCGTTAAACCAGCGCGCCg > 2:90534/1‑148 (MQ=255) acaaTCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACAGACCTTCAATGTGCACGTCAATCAGCCGCTGGACCACGACCTGATCTTGACCCTGAGCAACAACGATCAGGTAA‑CCATCAAGGCCGGTGAAACCAGCGCGCAGTa > 6:270736/4‑149 (MQ=14) aTCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGggcgttgttgctcagggtcacgaccaggtcgtgg < 8:319322‑M1/118‑35 (MQ=255) aTCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGggcgttgttgctcagggtcacgaccaggtcgtgg > 7:319322‑M1/1‑84 (MQ=255) aCGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTTAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAGCGCGCCGTACAccc < 1:223307/148‑1 (MQ=255) aCGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCa < 1:172719/149‑1 (MQ=255) aCCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGAcgcg < 8:132124/149‑1 (MQ=255) ccAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGAcgcg > 4:296137/1‑148 (MQ=255) gACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCACCCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCaa < 1:81838/149‑1 (MQ=255) gACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAg > 6:209362/1‑149 (MQ=255) aCCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAgg < 5:209362/149‑1 (MQ=255) aCCTCGGTAGACGAGAACGTCAAACCGACCTTCACTGTTCACTTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAGCTCGCCGTACACCCACGACGCGCAAgg < 5:270736/149‑1 (MQ=255) cTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGc > 3:321652/1‑148 (MQ=255) ggTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAGCGCGCCGTACCCCCACGACGCGCAAGGCGATg > 8:221258/1‑149 (MQ=255) gCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGt < 2:345611/149‑1 (MQ=39) ccGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACACTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTc > 7:258567/1‑149 (MQ=255) cGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCt < 8:226537/149‑1 (MQ=39) gaACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATc < 1:46161/149‑1 (MQ=40) gTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCCTCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGa > 3:98365/1‑149 (MQ=255) gTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACTACGCGCAACGCCATCACGTCTATCAGGa > 4:54486/1‑149 (MQ=255) aCCGACCTTCACTCTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGACGCTg < 6:311777/149‑1 (MQ=255) ccGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGACGCTgg > 8:141999/1‑149 (MQ=255) aCCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGACGCTGGCCa < 1:232605/149‑1 (MQ=255) tCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGACGCTGGCCAGAt > 3:78609/1‑148 (MQ=255) tCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGACGCTGGCCAGAt > 5:117784/1‑148 (MQ=255) | AGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAATCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCTCAGGTCA‑CCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGACGCTGGCCAGAT > NC_002947/201225‑201516 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |