Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 222,263 | C→T | 5.6% | Q40* (CAA→TAA) ‡ | PP_0170 → | ABC transporter substrate‑binding protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 222,263 | 0 | C | T | 5.6% | 277.9 / 3.7 | 92 | Q40* (CAA→TAA) ‡ | PP_0170 | ABC transporter substrate‑binding protein |
Reads supporting (aligned to +/- strand): ref base C (43/43); new base T (2/3); total (45/47) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.21e-01 |
CCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGG > NC_002947/222119‑222408 | cccGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAAtt > 7:212739/1‑149 (MQ=255) cccGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGCGCGAAAGCCTG‑GACGTCGGCACCCAAGCCGCCCCCGCCGTGGCCCAGCCCGAACGCAAGATC‑CGTATTGCCGA‑ACaaat > 1:19478/1‑147 (MQ=255) ccGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTc < 1:148224/149‑1 (MQ=255) ccGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTc > 2:154820/1‑149 (MQ=255) cGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCg < 5:41958/149‑1 (MQ=255) gTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCgg > 6:32997/1‑149 (MQ=255) tGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATc > 6:300284/1‑149 (MQ=255) acgacTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ATTGTTCGGCaata < 2:277729/148‑4 (MQ=255) acgacTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCg < 5:300284/148‑1 (MQ=255) gacTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTc > 8:37401/1‑148 (MQ=255) cTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTAc > 8:336732/1‑149 (MQ=255) aGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTGAAGCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACct > 1:295615/1‑149 (MQ=255) aGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACctg > 5:208758/1‑149 (MQ=255) aGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACct < 3:31764/148‑1 (MQ=255) gAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACctgct > 3:11371/1‑149 (MQ=255) aaCCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACctgctgc < 3:127170/149‑1 (MQ=255) aCCATCATTCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCTCGTATTGCCGA‑ACAATTCGGCATCGTCTACctgctgc < 1:251700/149‑1 (MQ=255) catcatGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACctgctgctg > 6:72185/1‑148 (MQ=255) catcatGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACctgctgctg > 7:313865/1‑148 (MQ=255) atcatGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGaa < 6:208758/149‑1 (MQ=255) tGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACgtg < 5:32997/149‑1 (MQ=255) cgcAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACgtggt < 7:336732/149‑1 (MQ=255) gcAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACgtggtg > 8:176245/1‑149 (MQ=255) cAATTCCATCAGCCGCGTGGCGGCAAGCTTCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGGCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACATTTCGGCATCGTCTACCTGCTTCTGAACGTGGTGc < 2:19478/149‑1 (MQ=255) cAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGc < 4:64641/149‑1 (MQ=255) cATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGAAAGATA‑CGTATTGCCGA‑ACAATTAGGCATAGTCTACCTGCTGCTGAACGTGGTGCGTGAcc > 6:358564/1‑149 (MQ=255) aTCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACgtggt < 2:292677/140‑1 (MQ=255) aTCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACgtggt > 1:292677/1‑140 (MQ=255) aTCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCATGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGAc > 7:237957/1‑147 (MQ=255) tCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAg < 2:188751/149‑1 (MQ=255) aGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTT‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGc < 7:37401/148‑1 (MQ=255) aGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGc < 3:352754/148‑1 (MQ=255) gccTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCt > 3:31100/1‑148 (MQ=255) ccTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGa < 8:212739/149‑1 (MQ=255) cTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGAt < 4:11371/149‑1 (MQ=255) tGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGAtt > 2:120718/1‑149 (MQ=255) ggcAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTgaga < 1:120718/149‑1 (MQ=255) cAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGaaa > 3:253454/1‑149 (MQ=255) aaGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGaaa > 7:170620/1‑148 (MQ=255) aaGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAac > 3:169929/1‑149 (MQ=255) aGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCCGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAaca > 8:290319/1‑149 (MQ=255) cATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACg < 1:154820/149‑1 (MQ=255) aTCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCCGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACgg < 7:290319/149‑1 (MQ=255) gCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAAc < 2:184967/110‑1 (MQ=255) gCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAAc > 1:184967/1‑110 (MQ=255) gCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAg < 4:343080/149‑1 (MQ=255) gCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAg > 5:13097/1‑149 (MQ=255) ccTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAacac > 4:201712/1‑142 (MQ=255) ccTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAacac < 3:201712/142‑1 (MQ=255) ccTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCATGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAgg < 8:237957/149‑1 (MQ=255) cTGGGCGCAAGCCTG‑GTCGTCGGCAGCATAGCCGCCCCCGCCGTTGACCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTTTTGAACGTTGTTCGTGACCAGCACCTGATTGAGAAACACGGCAATGa < 5:358564/149‑1 (MQ=255) ggCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCa < 7:126226/149‑1 (MQ=255) cgcAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAgg < 4:350773/149‑1 (MQ=255) cgcAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAgg < 7:135227/149‑1 (MQ=255) cgcAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAgg > 3:350773/1‑149 (MQ=255) cAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGc < 7:39228/149‑1 (MQ=255) aGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGcat < 7:187470/149‑1 (MQ=255) gCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGcatc > 2:53527/1‑149 (MQ=255) cTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGcatcga > 5:243246/1‑149 (MQ=255) tcgtcgGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑AGAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGcatcgacatc < 8:313865/149‑1 (MQ=255) ggCAGCCTAGCCGCCCCCGCCGTGTCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGt < 5:166907/149‑1 (MQ=255) ggCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCTTCGACATCGAAGt < 5:72185/149‑1 (MQ=255) gCATCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTc < 6:178417/149‑1 (MQ=255) aGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGa < 8:170620/149‑1 (MQ=255) tAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTgg > 1:202118/1‑149 (MQ=255) gccgccCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTgg < 4:253454/147‑1 (MQ=255) ccccGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGAGACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAg > 1:71624/1‑116 (MQ=255) ccccGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAg < 2:71624/115‑1 (MQ=255) cccGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCt > 6:260132/1‑149 (MQ=255) ccgccgTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGaa > 6:54571/1‑131 (MQ=255) ccgccgTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGaa < 5:54571/131‑1 (MQ=255) ccgTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCg < 4:31100/149‑1 (MQ=255) tGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGt < 7:176245/149‑1 (MQ=255) ccAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTga > 6:286053/1‑87 (MQ=255) ccAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTga < 5:286053/87‑1 (MQ=255) ccAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTGGCt > 2:96071/1‑149 (MQ=255) cAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTGGCTc > 8:191037/1‑149 (MQ=255) gCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTGGCTCGGc < 2:295615/149‑1 (MQ=255) gCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGAGTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGAAGCTGTCGGGTGGCTCGGc > 5:209024/1‑149 (MQ=255) ggCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCaa > 2:7204/1‑149 (MQ=255) gTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCAttg > 8:64748/1‑149 (MQ=255) gatGCCGA‑ATTGTTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGAtt < 7:338772/104‑1 (MQ=255) gatGCCGA‑ATTGTTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGAtt > 8:338772/3‑106 (MQ=255) ttGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCAttgtt < 6:13097/148‑1 (MQ=255) atGCCGA‑ATTGTTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTGGc < 7:277330/124‑1 (MQ=255) atGCCGA‑ATTGTTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTGGc > 8:277330/2‑125 (MQ=255) ccGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTGGCTCGGcc < 2:131293/128‑1 (MQ=255) ccGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTGGCTCGGcc > 1:131293/1‑128 (MQ=255) ccGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTcc > 8:119099/1‑149 (MQ=255) ccGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTcc > 2:213841/1‑149 (MQ=255) cGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCg > 4:155103/1‑149 (MQ=255) gA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCgg > 4:172318/1‑149 (MQ=255) | CCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTG‑GTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATC‑CGTATTGCCGA‑ACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGG > NC_002947/222119‑222408 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |