Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,796,838 | A→T | 9.8% | intergenic (+22/‑110) | PP_t43 → / → PP_2449 | tRNA‑Val/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,796,838 | 0 | A | T | 9.8% | 159.5 / 6.3 | 58 | intergenic (+22/‑110) | PP_t43/PP_2449 | tRNA‑Val/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (29/23); new base T (3/3); total (32/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AGAGCTTTACAGGTACGCATCGGGCCACTAATATGCGCACCACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAACTGGCTGTGGTAATGGCAG > NC_002947/2796692‑2796975 | agagCTTTACAGGTACGCATCGGGCCACTAATATGCGCACCACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAAt < 1:5012/149‑1 (MQ=255) ttACAGGTACGCATCGGGCCACTAATATGCGCACCACACGACAGGCCCATAGCTCAGTTGGTTAGAGCACGACCTTGACAAGGAGGGGGTCGTTGGTTCGAGTCGATTTGTGCGTACCAAATCGAAAAAGGGCGGTGAGAATTGAGCgg > 7:238924/1‑148 (MQ=17) ggTACGCATCGGGCCACTAATATGCGCACCACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCATTTCTGATCGCCCctt < 8:265317/149‑1 (MQ=17) tACGCATCGGGCCACTAATATGCGCACCACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCttttt < 5:283119/149‑1 (MQ=255) ggCCACTAATATGCGCACCACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCATTTCTGATCGCCCTTTTTCGATTTggt < 2:172082/149‑3 (MQ=17) ccACTAATATGCGCACCACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGcc > 8:123734/1‑149 (MQ=255) aCTAATATGCGCACCACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCttttt < 8:177755/136‑1 (MQ=255) aCTAATATGCGCAACACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCttttt > 7:177755/1‑136 (MQ=255) tAATATGCGCACCACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCg > 3:280669/1‑147 (MQ=255) tGCGCACCACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAagtagc < 7:270371/149‑1 (MQ=255) gcACCACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCgtg > 6:313067/1‑149 (MQ=255) gcACCACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCgtg > 6:1483/1‑149 (MQ=255) cacaCGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAAc < 5:1483/149‑1 (MQ=255) cGACAGGCACATAGCTCAGTTGGTTAGATCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAATGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGttt < 7:327655/149‑1 (MQ=255) cGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGttt < 2:268793/149‑1 (MQ=255) cGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGttt < 6:188872/149‑1 (MQ=255) agACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGTGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAATGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGttt < 7:174340/148‑1 (MQ=255) gACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTg > 5:201637/1‑149 (MQ=255) gCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTcgc > 1:146207/1‑149 (MQ=255) gCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTcgc < 7:123734/149‑1 (MQ=255) gCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCgg < 4:280669/149‑1 (MQ=255) cTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCggg < 3:167198/149‑1 (MQ=255) cTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCggg > 4:46406/1‑149 (MQ=255) ctaGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGATTTGATCGCCCTTTTTGCATTTGCGCCCGAAGGAGCGTGTAACGTTTGGTCGCGGTCCggg < 1:97762/146‑1 (MQ=255) aGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTTGTTCGAGTACAATTGTGACTACCAAATCGAAAAAGGGCGAGCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCAt > 8:11246/1‑149 (MQ=255) gtaggTTAGAGCACCACCTTGACAAGGTGGGGGTCGTTGGTTCGAGACCAATAGTGCCTACCAAATCCAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGCTCGCGGTCCcgg > 2:97762/4‑145 (MQ=25) ttGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATAc > 4:296051/1‑149 (MQ=255) gagCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGc < 5:313067/148‑1 (MQ=255) caccacCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTcg > 1:99857/1‑125 (MQ=255) caccacCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTcg < 2:99857/125‑1 (MQ=255) accaccTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAagcagc > 8:338247/1‑108 (MQ=255) accaccTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAagcagc < 7:338247/108‑1 (MQ=255) ccaccTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTa < 6:4205/149‑1 (MQ=255) gtggGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCtt < 3:296051/149‑1 (MQ=255) ggTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAAt > 6:367441/1‑149 (MQ=255) ggTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCATTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGCCGTGCTAGAATCCGCCCCTTCGaa > 4:45512/1‑148 (MQ=255) tGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCg > 2:238508/1‑132 (MQ=255) tGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCg < 1:238508/132‑1 (MQ=255) gTTCGAGTCCAATTGTGCCTACCAAATCGATAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAgg > 1:33604/1‑148 (MQ=255) gTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGtt > 4:330153/1‑91 (MQ=255) gTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGtt < 3:330153/91‑1 (MQ=255) tCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTa > 5:266763/1‑121 (MQ=255) tCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTa < 6:266763/121‑1 (MQ=255) tCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTc > 2:155654/1‑130 (MQ=255) tCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTc < 1:155654/130‑1 (MQ=255) tCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACAcgcg > 1:30571/1‑149 (MQ=255) tCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACAcgcg > 8:320158/1‑149 (MQ=255) gCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATAccc < 6:6202/97‑1 (MQ=255) gCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATAccc > 5:6202/1‑97 (MQ=255) ccTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAAc < 6:201637/148‑1 (MQ=255) cTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAACTg > 8:190051/1‑149 (MQ=255) tACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAACTgg > 4:121177/1‑149 (MQ=255) tACCAAATCGAAAAAGGGCGATAAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAACTgg > 6:303149/1‑149 (MQ=255) cAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAACTGGCtg > 1:169647/1‑149 (MQ=255) aaaaaGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAACTGGCTGTGGTAAt > 4:323370/1‑149 (MQ=255) aaaaGGGCGATCATTTCTGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAACTGGCTGTGGTAATg > 7:262427/1‑149 (MQ=255) aaaGGGCGATCATTTCTGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAACTGGCTGTGGTAATgg > 6:162622/1‑149 (MQ=255) gggCGATCATTTCTGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAACTGGCTGTGGTAATGGCAg > 4:151833/1‑149 (MQ=255) | AGAGCTTTACAGGTACGCATCGGGCCACTAATATGCGCACCACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAACTGGCTGTGGTAATGGCAG > NC_002947/2796692‑2796975 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |