Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,799,301 | A→G | 8.7% | A330A (GCT→GCC) ‡ | ansB ← | glutaminase‑asparaginase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,799,301 | 0 | A | G | 8.7% | 126.1 / 3.2 | 46 | A330A (GCT→GCC) ‡ | ansB | glutaminase‑asparaginase |
Reads supporting (aligned to +/- strand): ref base A (21/21); new base G (2/2); total (23/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.62e-01 |
GGCAACGAGGCCCTCAGAGCCGGCGCACCGGCCCTGAGGGGGAAGCACTCAGTACTCCCAGAAGATCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCACCCTGGTTGACATGCGACGAGCGGATGATCTGCACGCCGTTCTTGCGCAGTTCTTGCAGCGCCGGGACTACCCGCGACGATACCGAACC > NC_002947/2799154‑2799447 | ggaatcGAGGCCCTCAGAGCCGGCGCACCGGCCCTGAGGGGGAAGCACTCAGTACTCCCAGAAGATCCGCAGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGa < 8:77725/143‑1 (MQ=255) ggCAACGAGGCCCTCAGAGCCGGCGCACCGGCCCTGAGGGGGAAGCACTCAGTACTCCCAGAAGATCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGa < 6:106158/148‑1 (MQ=255) gAGGCCCTCAGAGCCGGCGCACCGGCCCTGAGGGGGAAGCACTCAGTACTCCCAGAAGATCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGa > 4:23324/1‑149 (MQ=255) ccTCAGGGCCGGTGCGCCGGCTCTGAGGGGGAAGCACTCAGTACTCCCAGAAGATCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAg > 4:30686/1‑149 (MQ=255) ccTCAGAGCCGGCGCACCGGCCCTGAGGGGGAAGCACTCAGTACTCCCAGAAGATCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAg > 8:23625/1‑149 (MQ=255) cTCAGAGCCGGCGCACCGGCCCTGAGGGGGAAGCACTCAGTACTCCCAGAAGATCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGt > 4:330787/1‑149 (MQ=255) tCAGAGCCGGCGCACCGGCCCTGAGGGGGAAGCACTCAGTACTCCCAGAAGATCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGGCTCACGAcct < 1:162553/145‑2 (MQ=255) tCAGAGCCGGCGCACCGGCCCTGAGGGGGAAGCACTCAGTACTCCCAGAAGATCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGGCTCACGAcct > 2:162553/1‑144 (MQ=255) ccGGCGCACCGGCCCTGAGGGGGAAGCACTCAGTACTCCCAGAAGATCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCtt < 6:243471/149‑1 (MQ=255) cGGCGCACCGGCCCTGAGGGGGAAGCACTCAGTACTCCCAGAAGATCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTg < 7:277237/149‑1 (MQ=255) cGGCGCACCGGCCCTGAGGGGGAAGCACTCAGTACTCCCAGAAGATCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTg < 2:64240/149‑1 (MQ=255) aCCGGCCCTGAGGGGGAAGCACTCAGTACTCCCAGAAGATCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATcc > 4:205151/1‑149 (MQ=255) gCCCTGAGGGGGAAGCACTCAGTACTCCCAGAAGATCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCt < 3:330787/149‑1 (MQ=255) ccTGAGGGGGAAGCACTCAGTACTCCCAGAAGATCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGt < 5:202572/149‑1 (MQ=255) gAGGGGGAAGCACTCAGTACTCCCAGAAGATCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCg > 4:81330/1‑149 (MQ=255) aGTACTCCCAGAAGATCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTAc < 3:23324/148‑1 (MQ=255) tCCCAGAAGATCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGGCTCACGAcctga > 4:308681/1‑102 (MQ=255) tCCCAGAAGATCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGGCTCACGAcctga < 3:308681/105‑4 (MQ=255) ccAGAAGATCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAaccac > 2:318077/1‑149 (MQ=255) cAGAAGATCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAaccacc > 7:166043/1‑149 (MQ=255) cAGAAGATCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCATGTCATCCGGCTGTTCGGCATTACGCAGTACGAAaccacc > 1:157380/1‑149 (MQ=255) agaagaTCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCAccc > 5:291052/1‑149 (MQ=255) gaagaTCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCACCCt > 5:38488/1‑149 (MQ=255) aagaTCGGCTGCAGCTCTTTGGTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCACCCTg < 7:70331/149‑1 (MQ=255) agaTCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCACCCTgg < 3:30686/149‑1 (MQ=255) gaTCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCAtt > 1:12383/1‑126 (MQ=255) gaTCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCAtt < 2:12383/126‑1 (MQ=255) tctTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCACCCTGGTTGACATGcgac > 7:48709/1‑147 (MQ=255) cTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCACCCTGGTTGACATGCGACGAGCGGATGATCt < 8:166043/149‑1 (MQ=255) tGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCACCCTGGTTGACATGCGACGAGCGGATGATCTg > 6:357565/1‑149 (MQ=255) ggTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCACCCTGGTTGACATGCGACGAGCGGATGATCTGCACGc < 3:205151/146‑1 (MQ=255) ggTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCACCCTGGTTGACATGCGACGAGCGGATGATCTGCACGCCGt > 1:233279/1‑149 (MQ=255) gTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCACCCTGGTTGACATGCGACGAGCGGATGATCTGCACGCCGtt < 2:233279/149‑1 (MQ=255) gCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCACCCTGGTTGACATGCGACGAGCGGATGATCTGCACGCCGTTCTTgc < 6:38488/148‑1 (MQ=255) ccATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCACCCTGGTTGACATGCGACGAGCGGATGATCTGCACGCCGTTCTTGCGCa < 1:318077/147‑1 (MQ=255) aTCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCACCCTGGTTGACATGCGACGAGCGGATGATCTGc > 5:356583/1‑129 (MQ=255) aTCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCACCCTGGTTGACATGCGACGAGCGGATGATCTGc < 6:356583/129‑1 (MQ=255) gCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCACCCTGGTTGACATGCGACGAGCGGATGATCTGCACGCCGTTCTTGCGCAGTTCTTg < 2:157380/149‑1 (MQ=255) aGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCACCCTGGTTGACATGCGACGAGCGGATGATCTg < 7:270789/122‑1 (MQ=255) aGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCACCCTGGTTGACATGCGACGAGCGGATGATCTg > 8:270789/1‑122 (MQ=255) cgcgCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCACCCTGGTTGACATGCGACGAGCGGATGATCTGCACGCCGTTCTTGCGCAGTTCTTGCAGCGCCgg < 8:48709/149‑1 (MQ=255) gcgcTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCACCCTGGTTGACATGCGACGAGCGGATGATCTGCACGCCGTTCTTGCGCa > 8:95658/1‑132 (MQ=255) gcgcTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCACCCTGGTTGACATGCGACGAGCGGATGATCTGCACGCCGTTCTTGCGCa < 7:95658/132‑1 (MQ=255) gcgcTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCACCCTGGTTGACATGCGACGAGCGGATGATCTGCACGCCGTTCTTGCGCAGTTCTTGCAGCGCCgg > 1:364084/1‑148 (MQ=255) gcgcTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCACCCTGGTTGACATGCGACGAGCGGATGATCTGCACGCCGTTCTTGCGCAGTTCTTGCAGCGCCgg > 5:20509/1‑148 (MQ=255) tttGCGGGTTCAGGTCGTGAGCCACGAACCAGACGTTCTTGTCATACGGCTGTTCTGCATTACGCAGTACGAAACCACCCTGGTTGACATGAGACGATCGGATGATCTGAACGACGTTCTTGCGCAGTTCTTGCAGCGCCGGGACTAcc > 2:213182/1‑149 (MQ=255) aGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCACCCTGGTTGACATGCGACGAGCGGATGATCTGCACGCCGTTCTTGCGCAGTTCTTGCAGCGCCGGGACTACCCGCGACGATAc < 2:364084/149‑1 (MQ=255) tGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCACCCTGGTTGACATGCGACGAGCGGATGATCTGCACGCCGTTCTTGCGCAGTTCTTGCAGCGCCGGGACTACCCGCGACGATACCGAAcc < 3:81330/149‑1 (MQ=255) | GGCAACGAGGCCCTCAGAGCCGGCGCACCGGCCCTGAGGGGGAAGCACTCAGTACTCCCAGAAGATCCGCTGCAGCTCTTTGCTGTCCTGGGTCTTGGTCATCGCTACCATCGCCAGGATCCGCGCTTTTTGCGGGTTCAGGTCGTGAGCCACGACCCAGTCGTTCTTGTCATCCGGCTGTTCGGCATTACGCAGTACGAAACCACCCTGGTTGACATGCGACGAGCGGATGATCTGCACGCCGTTCTTGCGCAGTTCTTGCAGCGCCGGGACTACCCGCGACGATACCGAACC > NC_002947/2799154‑2799447 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |