Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,957,905 | G→T | 7.9% | G222V (GGC→GTC) ‡ | PP_2589 → | aldehyde dehydrogenase family protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,957,905 | 0 | G | T | 7.9% | 186.7 / 4.5 | 59 | G222V (GGC→GTC) ‡ | PP_2589 | aldehyde dehydrogenase family protein |
Reads supporting (aligned to +/- strand): ref base G (28/26); new base T (3/2); total (31/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GAAGCTGGCCCCGGCGCTGGCTGCCGGTAACAGCGTGGTACTCAAGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGGCGCAGTCCAACCTCAAGCAGGTGTGGCTGGAGTGCGGCGG > NC_002947/2957762‑2958043 | gAAGCTGGCCCCGGCGCTGGCTGCCGGTAACAGCGTGGTACTCAAGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGATGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAg > 2:180757/1‑148 (MQ=255) cTGGCCCCGGCGCTGGCTGCCGGTAACAGCGTGGTACTCAAGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGc > 8:36710/1‑149 (MQ=255) cccGGCGCTGGCTGCCGGTAACAGCGTGGTACTCAAGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCggg > 7:215931/1‑148 (MQ=255) cccGGCGCTGGCTGCCGGTAACAGCGTGGTACTCAAGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCggg > 2:167741/1‑148 (MQ=255) cccGGCGCTGGCTGCCGGTAACAGCGTGGTACTCAAGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCggg > 5:239516/1‑148 (MQ=255) cccGGCGCTGGCTGCCGGTAACAGCGTGGTACTCAAGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCCGTCCTGCTCGCCCAGGCCCGGc < 8:288694/149‑1 (MQ=38) ccGGCGCTGGCTGCCGGTAACAGCGTGGTACTCAAGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCggg > 7:288493/1‑147 (MQ=255) gCTGCCGGTAACAGCGTGGTACTCAAGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTgg > 1:50870‑M2/1‑146 (MQ=255) ccGGTAACAGCGTGGTACTCAAGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCt < 4:77136/148‑1 (MQ=255) ccGGTAACAGCGTGGTACTCAAGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCt < 3:137218/148‑1 (MQ=255) ccGGTAACAGCGTGGTACTCAAGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTg > 3:263038/1‑149 (MQ=255) accgCGTGGTCCTCAAGCCCGCCGAGCACTCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCGGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCAccc < 8:288493/145‑1 (MQ=255) gTACTCAAGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGa < 7:36710/149‑1 (MQ=255) aCTCAAGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACt > 8:310394/1‑149 (MQ=255) tCAAGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGc > 4:264403/1‑149 (MQ=255) aaGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGc < 3:270305/147‑1 (MQ=255) cccGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCGGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTg > 5:317981/1‑147 (MQ=255) cccGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTg < 6:317981/147‑1 (MQ=255) cccGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGt < 5:247532/149‑1 (MQ=255) cccGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGt < 3:264403/149‑1 (MQ=255) gAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCAc < 1:223121/149‑1 (MQ=255) gAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCAc < 7:352656/149‑1 (MQ=255) aaTCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGgcg < 8:126563/107‑1 (MQ=255) aaTCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGgcg > 7:126563/1‑107 (MQ=255) aaTCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTCGAAGCCGGTGTGCCGGAAGGCGGGATGAACGTGCTGCCGGGCCTGGGCGAGCAGGCCGCGCAGGCGCTGGGCCTGCACCCGGATGAGGACTGCCTGGTATTCACCgg > 5:206304/1‑148 (MQ=255) aCCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGATGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTcc < 1:180757/148‑1 (MQ=255) aCCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTc > 7:133327/1‑139 (MQ=255) aCCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTc < 8:133327/139‑1 (MQ=255) cGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGt < 7:310394/148‑1 (MQ=255) cGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGt < 4:263038/148‑1 (MQ=255) cccTGCGCCTGGCCGAGCTGGGGCTGGAAGGCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGGCGGGGCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCTGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGc < 6:206304/149‑1 (MQ=255) ccTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTgggccgaaaacggtgattgctcggcgggcttgagtaccacgctgttaccggcagc < 1:236240‑M2/148‑56 (MQ=255) ccTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCAc < 6:217948/138‑1 (MQ=255) ccTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCAc > 5:217948/1‑138 (MQ=255) cTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCaa < 1:167741/149‑1 (MQ=255) ccTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTgggccgaaaatggtgattgctcggcgggcttgagtaccacgctgttaccggcagccagcgcc < 3:246299‑M2/149‑63 (MQ=255) cccAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATg < 6:239516/149‑1 (MQ=255) cccAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATg > 3:59789/1‑149 (MQ=255) ccAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATg > 1:209170/1‑148 (MQ=255) ccAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATg > 4:87169/1‑148 (MQ=255) gCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTgggccgaaaacggtgattgctcggcgggcttgagtaccacgctgttaccggcagccagcgccggggccagc > 2:236240‑M2/1‑78 (MQ=255) gcTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTgg > 8:305142‑M2/1‑72 (MQ=255) gcTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCgg > 4:257745/1‑149 (MQ=255) gAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGgcg > 7:263875/1‑147 (MQ=255) cGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGGCGCAGTCCAACCTCAAg < 2:209170/149‑1 (MQ=255) ggAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTggg < 1:359822/108‑1 (MQ=255) ggAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTggg > 2:359822/1‑108 (MQ=255) aGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTgggccgaaaatggtgattgctcggcgggcttgagtaccacgctgttaccggcagccagcgccggggccagcttccaggcggccatatcgagcgggaag > 4:246299‑M2/1‑51 (MQ=255) tGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTCCTTCATGCAGTACTCGGCGCAGTCCAACCTCAAGCAGGTGTgg > 4:227302/1‑149 (MQ=255) cTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGGCGCAGTCCAACCTCAAGCAGGTGTGGCt > 1:72897/1‑149 (MQ=255) aaCGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGGCGCAGTCCAACCTCAAGCAGGTGTGGCTg > 1:104951/1‑147 (MQ=255) gcctgCCCGGCCTGCTCGCCCAGGCCCGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGGCGCAGTCCAACCTCAAGCAGGTGTGGCTGGAGTgc > 2:271620/4‑149 (MQ=255) cctgCCCGGCCTGCTCGCCCAGGCCCGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGGCGCAGTCCAACCTCAAGCAGGTGTGGCTGGAGTgcg > 4:27236/3‑149 (MQ=255) tgCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGgc < 3:367172/112‑1 (MQ=255) tgCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACACGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTAATTCATGCAGTACTCGgc > 4:367172/1‑112 (MQ=255) gCCCGGCCTGCTCGCCCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGGCGCAGTCCAACCTc < 4:115121/124‑1 (MQ=255) gCCCGGCCTGCTCGCCCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGGCGCAGTCCAACCTc > 3:115121/1‑124 (MQ=255) ccGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGGCGCAGTCCAACCTCAAGCAGGTGTGGCTGGAGTGcggcgg < 3:87169/149‑1 (MQ=255) ccGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGGCGCAGTCCAACCTCAAGCAGGTGTGGCTGGAGTGcggcgg < 8:263875/149‑1 (MQ=255) | GAAGCTGGCCCCGGCGCTGGCTGCCGGTAACAGCGTGGTACTCAAGCCCGCCGAGCAATCACCGTTTTCGGCCCTGCGCCTGGCCCAGCTGGCGCTGGAAGCCGGTGTGCCGGAAGGCGTGCTGAACGTGGTGCCGGGCCTGGGCGAGCAGGCCGGGCAGGCGCTGGGCCTGCACCCGGATGTGGACTGCCTGGTATTCACCGGCTCCACCCAGGTGGGCAAGTACTTCATGCAGTACTCGGCGCAGTCCAACCTCAAGCAGGTGTGGCTGGAGTGCGGCGG > NC_002947/2957762‑2958043 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |