Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,573,247 | T→C | 9.8% | T700A (ACG→GCG) | PP_3155 ← | ferric siderophore receptor |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,573,247 | 0 | T | C | 9.8% | 136.2 / 4.9 | 51 | T700A (ACG→GCG) | PP_3155 | ferric siderophore receptor |
Reads supporting (aligned to +/- strand): ref base T (25/21); new base C (2/3); total (27/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.56e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.34e-01 |
ATGCACTACTCCAACGCCGGGATAAAGCAGCCAAACGACGGCATAGAGTCGTACTCGCTGTTCTACAGCACAGCGTTCTGACATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAACACGTTTTTCACGTCCAGATTCAACCGCACGTGTTCGTTGACCTTGTAGAAGCTCAACAGGTCGACCACGCTGTAGCGCTCCATC > NC_002947/3573103‑3573392 | aTGCACTACTCCAACGCCGGGATAAAGCAGCCAAACGACGGCATAGAGTCGTACTCGCTGTTCTACAGCACAGCGTTCTGACATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTgcgc > 3:173570/1‑149 (MQ=255) ctCCAACGCCGGGATAAAGCAGCCAAACGACGGCATAGAGTCGTACTCGCTGTTCTACAGCACAGCGTTCTGACATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑Gcc > 7:131342/1‑149 (MQ=255) ctCCAACGCCGGGATAAAGCAGCCAAACGACGGCATAGAGTCGTACTCGCTGTTCTACAGCACAGCGTTCTGACATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGCGCACGGTgcagg > 7:346103/1‑146 (MQ=255) tCCAACGCCGGGATAAAGCAGCCAAACGACGGCATAGAGTCGTACTCGCTGTTCTACAGCACAGCGTTCTGACATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCg > 7:177990/1‑149 (MQ=255) cAACGCCGGTATAAAGCAGCCAAACGAGGGCATAGAGTGTTACTGGTTGTTATACAGAACAGCGTTCTTACATTACGGGGCCACTGCGCGGCCCGGGCATTTCTTATGTTATAGTAAACGCCGGCCTGCACCGCGCACGGTgctggccg < 2:314721/149‑7 (MQ=255) cAACGCCGGGATAAAGCAGCCAAACGACGGCATAGAGTCGTACTCGCTGTTCTACAGCACAGCGTTCTGACATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCggg > 2:278526/1‑149 (MQ=255) cAACGCCGGGATAAAGCAGCCAAACGACGGCATAGAGTCGTACTCGCTGTTCTACAGCACAGCGTTCTGACATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGCGCACGGTgcaggccg < 8:346103/149‑7 (MQ=255) cAACGCCGGGATAAAGCAGCCAAACGACGGCATAGAGTCGTACTCGCTGTTCTACAGCACAGCGTTCTGACATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGCGCACGGTgcaggc < 3:144529/147‑5 (MQ=255) aCGCCGGGATAAAGCAGCCAAACGACGGCATAGAGTCGTACTCGCTGTTCTACAGCACAGCGTTCTGACATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGt < 8:177990/149‑1 (MQ=255) agcagcCAAACGACGGCATAGAGTCGTACTCGCTGTTCTACAGCACAGCGTTCTGACATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGt < 8:131342/149‑1 (MQ=255) gcCAAACGACGGCATAGAGTCGTACTCGCTGTTCTACAGCACAGCGTTCTGACATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAACGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGaa > 3:283852/1‑149 (MQ=255) ccAAACGACGGCATAGAGTCGTACTCGCTGTTCTACAGCACAGCGTTCTGACATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAAc < 1:36255/149‑1 (MQ=255) aaaCGACGGCATAGAGTCGTACTCGCTGTTCTACAGCACAGCGTTCTGACATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAAcgc < 1:278526/149‑1 (MQ=255) aaCGACGGCATAGAGTCGTACTCGCTGTTCTACAGCACAGCGTTCTGACATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAAcgcg > 2:105858/1‑149 (MQ=255) aTAGAGTCGTACTCGCTGTTCTACAGCACAGCGTTCTGACATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCCGGGTATACATAGCTGTTGAACGCGCCCTCGTCa > 3:54039/1‑149 (MQ=255) agagTCGTACTCGCTGTTCTACAGCACAGCGTTCTGACATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑a > 3:241459/1‑149 (MQ=255) gTCGTACTCGCTGTTCTACAGCACAGCGTTCTGACATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑Acc > 7:338069/1‑148 (MQ=255) cTCGCTGTTCTACAGCACAGCGTTCTGACATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCttgtt > 3:204751/1‑149 (MQ=255) ttCTACAGCACAGCGTTCTGACATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAaca < 4:204751/147‑1 (MQ=255) gcacagcGTTCTGACATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAACACGTTTTTCa < 4:120381/149‑1 (MQ=255) ttCTGACATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAACACGTTTTTCACGTCCAGa < 6:251808/149‑1 (MQ=255) tGACATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAACACGTTTTTCACGTCCAGAtt > 1:20468/1‑148 (MQ=255) aCATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGtat > 3:267389/1‑84 (MQ=255) aCATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGtat < 4:267389/84‑1 (MQ=255) aCATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAACACGTTTTTCACGTCCAGATTCaa > 7:91850/1‑149 (MQ=255) aCATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAACACGTTTTTCACGTCCAGATTCaa > 2:108208/1‑149 (MQ=255) gacACTGATCGGCACCGGCAATTCAGAAGGTATAGGAAAAGCCGGCCTGCACCGTGCGCGGTGC‑‑GCAGGGGTATACATAGATGTTGAACGCGCCCTCGTCAT‑‑ACCACTTGTTGAACACGTTTTTCACTTCCAGATTAAAAAGCACgtgt > 2:56529/3‑149 (MQ=255) ccACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAACACGTTTTTCACGTCCAGATTCAACCGCACGTGtt > 8:162863/1‑149 (MQ=255) cACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAACACGTTTTTCACGTCCAGATTCAACCGCACGTGTTc > 1:249912/1‑149 (MQ=255) aCTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCCGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAACACGTTTTTCACGTCCAGATTCAACCGCACGTGTTCg < 4:54039/149‑1 (MQ=255) cgcgGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAACACGTTTTTCACGTCCAGATTCAACCGCACGTGTTCGtt < 2:260228/147‑1 (MQ=255) gcgGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAACACGTTTTTCACGTCCAGATTCAACCGCACGTGTTCGTTGAc < 2:20468/149‑1 (MQ=255) ggCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAACACGTTTTTCACGTCCAGATTCAACCGCACGTGTTCGTTGACCt > 5:330835/1‑149 (MQ=255) ccccGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAACACGTTTTTCACGTCCAGATTCAACCGCACGTGTTCGTTGACCTTg < 4:241459/149‑1 (MQ=255) ccGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAACACGTTTTTCACGTCCAGATTCAACCGCACGTGTTCGTTGCCCTTg > 2:118215/1‑147 (MQ=255) cGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCATTCACCCCTTGTTGAACACGTTTTTCACGTCCAGATTCAACCGCACGTGTTCGTTGACCTTGt < 1:105858/149‑1 (MQ=255) cGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAACACGTTTTTCACGTCCAGATTCAACCGCACGTGTTCGTTGACCTTg > 8:348139/1‑146 (MQ=255) aTTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAACACGttttt < 3:285423/104‑1 (MQ=255) aTTCAGAAGGTATAGGAAACGCAGGCCAGCACCGTGCGCCGTGC‑‑GCCGGGGTATACATAGCTGTTTAACGCGCCCTCGACAT‑‑ACCCCTTGTTGAAAAAGttttt > 4:285423/1‑104 (MQ=255) ttCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAACACGTTTTTCACGTCCAGATTCAACCGCACGTGTTCGTTGACCTTGTAGAAGCTc < 1:108208/149‑1 (MQ=255) gAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCACTCGTCAT‑‑ACCCCTTGTTGCACACGTTTTTCACGTCCAGCTTCAACCGAACGTATTCGTTGACATTGTAGAAGCTaaa > 4:63532/1‑147 (MQ=255) aaGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAACACGTTTTTCACGTCCAGATTCAAc < 2:84500/114‑1 (MQ=255) aaGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAACACGTTTTTCACGTCCAGATTCAAc > 1:84500/1‑114 (MQ=255) ggTATAGGAAACGCCTGCCTGAACCTTTCGCGGTGC‑‑GACGTGGTATACATAGCTGTTTAACGCGCCCTCGTCAT‑‑ACCCATTGTTGAACACGTTTTTCACGTCAAGATTCAAACGCACGTTTTCGTTGACCTTGTAGAAGCTCAAAAGGt < 1:56529/149‑1 (MQ=255) ggTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAACACGTTTTTCACGTCCAGATTCAACCGCACGTGTTCGTTGACCTTGTAGAAGCTCAACAGGt < 7:348139/149‑1 (MQ=255) taGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAACACGTTTTTCACGTCCAGATTCAACCGCACGTGTTCGTTGACCTTGTAGAAGCTCAACAGGTCGAc < 6:330835/149‑1 (MQ=255) ggAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACACCTTGTTGAACACGTTTTTCACGTCCAGATTGAACAGCACGTGTTCGTTGAACTTGTAGAAGCTCAACAGGTCGACCa > 3:275724/1‑149 (MQ=255) gAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGATCACGTTTTTCACGTCCAGATTCAACCGCACGTGTTCGTTGACCTTGTAGAAGCTCAACAGGTCGACCAc > 7:314914/1‑149 (MQ=255) ccGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAACACGTTTTTCACGTCCAGATTCAACCGCACGTGTTCGTTGACCTTGTAGAAGCTCAACAGGTCGACCACGCTGTa < 8:91850/149‑1 (MQ=255) ccggcgCACCGCGCACGGTGCAGGCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAACACGTTTTTCACGTCCAGATTCAACCGCACGTGTTCGTTGACCTTGTAGAAGCTCAACAGGTCGACCACGCTg > 5:97322/6‑147 (MQ=255) ccGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAACACGTTTTTCACGTCCAGATTCAACCGCACGTGTTCGTTGACCTTGTAGAAGCTCAACAGGTCGACCACGCTGTAGCGCTCCATc < 8:338069/149‑1 (MQ=255) | ATGCACTACTCCAACGCCGGGATAAAGCAGCCAAACGACGGCATAGAGTCGTACTCGCTGTTCTACAGCACAGCGTTCTGACATTACGGGGCCACTGCGCGGCCCCGGCAATTCAGAAGGTATAGGAAACGCCGGCCTGCACCGTGCGCGGTGC‑‑GCCGGGGTATACATAGCTGTTGAACGCGCCCTCGTCAT‑‑ACCCCTTGTTGAACACGTTTTTCACGTCCAGATTCAACCGCACGTGTTCGTTGACCTTGTAGAAGCTCAACAGGTCGACCACGCTGTAGCGCTCCATC > NC_002947/3573103‑3573392 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |