| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,722,495 | A→G | 6.5% | intergenic (‑41/‑249) | PP_5598 ← / → PP_3288 | hypothetical protein/universal stress protein family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,722,495 | 0 | A | G | 6.5% | 180.9 / 2.3 | 61 | intergenic (‑41/‑249) | PP_5598/PP_3288 | hypothetical protein/universal stress protein family protein |
| Reads supporting (aligned to +/- strand): ref base A (32/25); new base G (2/2); total (34/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 | |||||||||||
GACAAACCGCTCGGCTTCGGCAGCCGTACTGAAACCCACCCGCCAGTCATCCATGCGCACCCAACAGCGTCCCTGCTCAGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAGGGTGCGCCAGCGCAGTGTCGAGACATTGATCGGCGTCAAGTTCTTGCGCCATGG > NC_002947/3722350‑3722640 | gACAAACCGCTCGGCTTCGGCAGCCGTACTGAAACCCACCCGCCAGTCATCCATGCGCACCCAACACCGTCCCTGCTCAGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAg < 3:85774/148‑1 (MQ=255) gCTCGGCTTCGGCAGCCGTACTGAAACCCACCCGCCAGTCATCCATGCGCACCCAACAGCGTCCCTGCTCAGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTg > 7:43474/1‑149 (MQ=255) cTCGGCTTCGGCAGCCGTACTGATACCCACCCGACACTCATCGATGCGCACCCAACATCGTCCCTGGTCAGTATTCTTCTGGACTTAAACTTTCATCAGGGCCTCCAAAGCTTGTTTCGTTAGAGAATGCATAATGAAGGGTTCCCTGc < 8:96436/149‑1 (MQ=255) ttCGGCAGCCGTACTGAAACCCACCCGCCAGTCATCCATGCGCACCCAACAGCGTCCCTGCTCAGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACACTGCAGAATGAAGGCGTCCCTGCCGGCAg > 5:278875/1‑149 (MQ=255) ttCGGCAGCCGTACTGAAACCCACCCGCCAGTCATCCATGCGCACCCAACAGCGTCCCTGCTCAGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAg > 3:38603/1‑149 (MQ=255) gCCGTACTGAAACCCACCCGCCAGTCATCCATGCGCACCCAACAGCGTCCCTGCTCAGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGt < 8:43474/149‑1 (MQ=255) ccGTACTGAAACCCACCCGCCAGTCATCCATGCGCACCCAACAGCGTCCCTGCTCAGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTg < 4:193298/149‑1 (MQ=255) cTGAAACCCACCCGCCAGTCATCCATGCGCACCCAACAGCGTCCCTGCTCAGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGc < 6:346184/148‑1 (MQ=255) aaaCCCACCCGCCAGTCATCCATGCGCACCCAACAGCGTCCCTGCTCAGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCa < 4:38603/148‑1 (MQ=255) ccacccGCCAGTCATCCATGCGCACCCAACAGCGTCCCTGCTCAGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCg > 2:333621/1‑149 (MQ=255) acccGCCAGTCATCCATGCGCACCCAACAGCGTACCTGCTCAGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGtt < 3:170357/149‑1 (MQ=255) cccGCCAGTCATCCATGCGCACCCAACAGCGTCCCTGCTCAGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGtt > 5:134239/1‑148 (MQ=255) aGTCATCCATGCGCACCCAACAGCGTCCCTGCTCAGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCa > 8:293189/1‑149 (MQ=255) gcACCCAACAGCGTCCCTGCTCAGTATTCTTCTCGACGTAAACGTTCAACAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTgc > 6:18347/1‑149 (MQ=255) aaCAGCGTCCCTGCTCAGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATgg > 3:28141/1‑134 (MQ=255) aaCAGCGTCCCTGCTCAGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATgg < 4:28141/134‑1 (MQ=255) aaCAGCGTCCCTGCTCAGTATTCTTCTCGACGTAAACGTTCATCAGGGCATCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCTGCAGAGCAGGTGAATCTAAGGGCGTTAACGCCATGGCACGCCTGCGGAGcc > 5:176218/1‑149 (MQ=255) gCTCAGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGc < 5:50853/127‑1 (MQ=255) gCTCAGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGc > 6:50853/1‑127 (MQ=255) cTCAGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATg < 6:134239/147‑1 (MQ=255) tCAGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGtt > 6:101834/1‑148 (MQ=255) aGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGGAGGCGTCCCTGCCGGCAg < 8:321276/86‑1 (MQ=255) aGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGGAGGCGTCCCTGCCGGCAg < 8:316304/86‑1 (MQ=255) aGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGGAGGCGTCCCTGCCGGCAg > 7:321276/1‑86 (MQ=255) aGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGGAGGCGTCCCTGCCGGCAg > 7:316304/1‑86 (MQ=255) aGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGtt < 6:52303/146‑1 (MQ=255) aGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTACACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGat < 2:138817/149‑1 (MQ=255) ttcttcTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATgg > 4:38384/1‑149 (MQ=255) ttcttcTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATgg < 1:333621/149‑1 (MQ=255) tcGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGGGAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAg > 1:261683/1‑149 (MQ=255) tcGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAgg < 8:148035/93‑1 (MQ=255) tcGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAgg > 7:148035/1‑93 (MQ=255) tcGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAg > 8:257379/1‑149 (MQ=255) gACGTAAACGTTCATCAGGGCCTCCATATCATGTATCTGTATTCTATGCATAATGAAGGCGTCCCTGCCGGCAGCTCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAgg < 6:176218/148‑1 (MQ=255) gACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAgg < 7:293189/148‑1 (MQ=255) gACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAg < 7:15512/147‑1 (MQ=255) aCGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAGGGt > 3:157080/1‑149 (MQ=255) gTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGgcgc < 1:63053/117‑1 (MQ=255) gTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGgcgc > 2:63053/1‑117 (MQ=255) gTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAGGGTgc > 1:218484/1‑149 (MQ=255) gTAAACGATCATCAGGGCATCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCAAGCGGCGCCTGAGGAGAATGTTGATATGACTACAGGTTgc > 6:22371/1‑149 (MQ=255) tcaGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTg < 8:157137/121‑1 (MQ=255) tcaGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTg > 7:157137/1‑121 (MQ=255) tcaGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAGGGTGCGCCAGCGCAgt > 6:174235/1‑149 (MQ=255) caGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAGGGTGCGCCAGCGCAgtg > 1:35379/1‑149 (MQ=255) aGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAGGGTGCGCCAGCGCAgtgt > 5:156140/1‑149 (MQ=255) gggCCTCCAAAGCATGTATCGGTAGACAATGCAGATTGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAGGGTGCGCCAGCGCAGTGTc > 2:353237/1‑149 (MQ=255) ggCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAGGGTGCGCCAGCGCAGTGTc > 2:295188/1‑148 (MQ=255) gCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAGGGTGCGCCAGCGCAGTGTCga < 6:156140/149‑1 (MQ=255) tCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAGGGTGCGCCAGCGCAGTGTCgaga > 8:194075/1‑148 (MQ=255) cAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAGGGTGCGCCAGCGCAGTGTCGAGACAt > 2:234250/1‑149 (MQ=255) tATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAGGGTGCGCCAGCGCAGTGTCGAGACATTGATCGGc < 2:35379/148‑1 (MQ=255) aTCGGTAGACAATGAAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAGGGTGCGCCAGCGCAGTGTCGAGACATTGATCGGCGt > 6:153740/1‑149 (MQ=255) tCGGTAGACAATGCAGAATGAAGGCGTCCTTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAGGGTGCGCCAGCGCAGTGTCGAGACATTGATCGGCGt > 4:167197/1‑148 (MQ=255) tCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAGGGTGCGCCAGCGCAGTGTCGAGACATTGATCGGCGt > 7:43923/1‑148 (MQ=255) gACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAGGGTGCGCCAGCGCAGTGTCGAGACATTGATCGGCGTCAAGTTc < 7:257379/149‑1 (MQ=255) aTGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAGGGTGCGCCAGCGCAGTGTCGAGACATTGATCGGCGTCAAGTTCTTgc < 5:101834/149‑1 (MQ=255) gCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAGGGTGCGCCAGCGCAGTGTCGAGACATTGATCGGCGTCAAGTTCTTgcgc > 8:179414/1‑149 (MQ=255) aGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGTCTACAGGGTGCGCCAGCGCAGTTTCGAGACATTGATCGGCGACAAGTTCTTGCTCCa > 6:99450/1‑149 (MQ=255) aaTGAAGGCGTCCTTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAGGGTGCGCCAGCGCAGTGTCGAGACATTGATCGGCGTCAAGTTCTTGCGCCATg < 3:167197/149‑1 (MQ=255) aTGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAGGGTGCGCCAGCGCAGTGTCGAGACATTGATCGGCGTCAAGTTCTTGCGCCATgg < 3:300349/149‑1 (MQ=255) | GACAAACCGCTCGGCTTCGGCAGCCGTACTGAAACCCACCCGCCAGTCATCCATGCGCACCCAACAGCGTCCCTGCTCAGTATTCTTCTCGACGTAAACGTTCATCAGGGCCTCCAAAGCATGTATCGGTAGACAATGCAGAATGAAGGCGTCCCTGCCGGCAGCGCAGGTGAAGCTCAGGGCGTTAACGCCATGGCACGCCTGCGGCGCCTGAGGTGAATGTTGATATGGCTACAGGGTGCGCCAGCGCAGTGTCGAGACATTGATCGGCGTCAAGTTCTTGCGCCATGG > NC_002947/3722350‑3722640 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |