| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,726,082 | C→G | 6.5% | G245G (GGC→GGG) | PP_3291 → | metallo‑beta‑lactamase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,726,082 | 0 | C | G | 6.5% | 193.6 / 2.9 | 61 | G245G (GGC→GGG) | PP_3291 | metallo‑beta‑lactamase family protein |
| Reads supporting (aligned to +/- strand): ref base C (31/26); new base G (2/2); total (33/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01 | |||||||||||
GTCAGGACGGCGGACGTGCTGTTGATCGAATCTACCTATGGCGATCGCCAGCATCCCGCCGAATCGACCGAGCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTCCGATGGCCACCGACGCCACCGCCCTGTACCAGCAGTACCGCAGTGAGCATCGGCTGACCGCAGCC > NC_002947/3725936‑3726229 | gTCAGGACGGCGGACGTGCTGTTGATCGAATCTACCTATGGCGATCGCCAGCATCCCGCCGAATCGACCGAGCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCcg > 5:210721/1‑149 (MQ=255)gTCAGGACGGCGGACGTGCTGTTGATCGAATCTACCTATGGCGATCGCCAGCATCCCGCCGAATCGACCGAGCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCcg > 3:230230/1‑149 (MQ=255) aGGACGGCGGACGTGCTGTTGATCGAATCTACCTATGGCGATCGCCAGCATCCCGCCGAATCGACCGAGCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCgcgc < 2:128138/149‑1 (MQ=255) aGGACGGCGGACGTGCTGTTGATCGAATCTACCTATGGCGATCGCCAGCATCCCGCCGAATCGACCGAGCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCAGTTGGGcgcgg > 8:191915/1‑148 (MQ=255) cggACGTGCTGTTGATCGAATCTACCTATGGCGATCGCCAGCATCCCGCCGAATCGACCGAGCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTg < 6:23368/149‑1 (MQ=255) ggACGTGCTGTTGATCGAATCTACCTATGGCGATCGCCAGCATCCCGCCGAATCGACCGAGCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCAGTTGGGCGCGGCCAACGGc < 7:191915/149‑1 (MQ=255) ggACGTGCTGTTGATCGAATCTACCTATGGCGATCGCCAGCATCCCGCCGAATCGACCGAGCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATCGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGc < 1:260367/149‑1 (MQ=255) gCTGTTGATCGAATCTACCTATGGCGATCGCCAGCATCCCGCCGAATTGACCGTGCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGt > 3:281048/1‑149 (MQ=255) cTGTTGATCGAATCTACCTATGGCGATCGCCAGCATCCCGCCGAATCGACCGAGCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGt < 4:230230/148‑1 (MQ=255) tGTTGATCGAATCTACCTATGGCGATCGCCTGCATCCCGCCGAATCGACCGAGCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCAGCGCCCAACTGCTCATGttt > 3:352177/1‑147 (MQ=255) tCGAATCTACCTATGGCGATCGCCAGCATCCCGCCGAATTGACCGTGCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTg < 4:281048/149‑1 (MQ=255) tCTACCTATGGCGATCGCCAGCATCCCGCCGAATCGACCGAGCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCt < 4:237410/143‑1 (MQ=255) tCTACCTATGGCGATCGCCAGCATCCCGCCGAATCGACCGAGCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCt > 3:237410/1‑143 (MQ=255) aCCTATGGCGATCGCCAGCACCCCGCCGAATCGACCGAGCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGCCCGCGCCCAACTGATCATGTATTACCTCTACACGCt > 8:16320/1‑149 (MQ=255) ccTATGGCGATCGCCAGCATCCCGCCGAATCGACCGAGCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGc < 3:109096/147‑1 (MQ=255) cTATGGCGATCGCCAGCATCCCGCCGAATCGACCGAGCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCACCTGCTCATGTATTACCTGTACACGCTc > 4:56268/1‑148 (MQ=255) gCCAGCACCCCGCCGAATCGACCGAGCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCgg < 7:16320/149‑1 (MQ=255) ccAGCATCCCGCCGAATCGACCGAGCAGTACCTTGCCAAGGTCAACAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGc > 7:26098/1‑149 (MQ=255) ccgccgAATCGACCGAGCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCt < 6:210721/149‑1 (MQ=255) cgccgAATCGACCGAGCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCt > 1:300531/1‑148 (MQ=255) ccgAATCGACCGAGCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCt < 2:45571/146‑1 (MQ=255) ccgAATCGACCGAGCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCt > 1:45571/1‑146 (MQ=255) ccgAATCGACCGAGCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGat < 2:23075/149‑1 (MQ=255) cggaTCGACCGATGAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCt < 4:314961/142‑1 (MQ=255) cgAATCGACCGAGCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGATCAAGCGCGACCGGCTGATCCCTGaca > 3:314961/1‑147 (MQ=255) gCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATc < 8:33904/145‑1 (MQ=255) gCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATc > 7:33904/1‑145 (MQ=255) aGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCt > 8:323249/1‑148 (MQ=255) gTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCCATCTACCTg > 3:327021/1‑148 (MQ=255) tACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGAc > 2:321699/1‑117 (MQ=255) tACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGAc < 1:321699/117‑1 (MQ=255) tACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGaa > 3:8938/1‑149 (MQ=255) ccTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAAc < 5:159786/148‑1 (MQ=255) gCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTcc > 2:207367/1‑149 (MQ=255) cAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTCCGa > 2:20621/1‑149 (MQ=255) aaGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGCACCCTCGTTCGCCGTTGGCCGCGCCCAACAGAACAAGTATTAAATGTACACGGGAAAGCGGGACCGGGTGAGGCCTGATAAGCCGAAGAACCTGAACAGTCCggg > 8:55730/1‑147 (MQ=255) tcaACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGAGCCCTGATATCCCGATCTACCTGAACAGTCCGATGGCCAcc > 1:135703/1‑149 (MQ=255) aCGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTCCGATGGCCACCGAc > 2:222948/1‑149 (MQ=255) gAAACGCTCCTGCGTCATGGGATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTCCGATGGCCACCGACGc < 8:26098/149‑1 (MQ=255) aaaCGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTCCGATGGCCACCGACGc > 7:88050/1‑148 (MQ=255) cTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTCCGATGGCCACCGACGCCACCGc > 3:83542/1‑149 (MQ=255) tGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTCCGATGGCCACCGACGCCACCGCCCt > 1:147707/1‑148 (MQ=255) tGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTCCGATGGCCACCGACGCCACCGCCCTg > 6:119715/1‑149 (MQ=255) cGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTCCGATGGCCACCGACGCCACCGCCCTGTa < 7:323249/149‑1 (MQ=255) gTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTCCGATGGCCACCGACGCCACCGCCCTGTAc < 8:88050/149‑1 (MQ=255) gTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTCCGATGGCCACCGACGCCACCGCCCTGTAc < 5:119715/149‑1 (MQ=255) cATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTCCGATGGCCACCGACGCCACCGCCCTGTACca > 6:55339/1‑149 (MQ=255) aTGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTCCGATGGCCACCGACGCCACCGCCCTGTACcag < 3:294426/149‑1 (MQ=255) ccctcgtaccctcgtTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTCCGATGGc > 2:143254/1‑115 (MQ=255) ccctcgtaccctcgtTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTCCGATGGc < 1:143254/115‑1 (MQ=255) tcgtaccctcgtTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCaa > 2:335231/1‑61 (MQ=255) tcgtaccctcgtTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCaa < 1:335231/61‑1 (MQ=255) gtaccctcgtTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTCCGATGGCCACCGACGCCACCGCCCTGTACCAGCAGTACCGCAGTGa < 1:222948/149‑1 (MQ=255) gtaccctcgtTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTCCGATGGCCACCGACGCCACCGCCCTGTACCAGCAGTACCGCAGTGa < 1:20621/149‑1 (MQ=255) tcgtTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTCCGATGGCCACCGACGCCACCTCCCTGTACCAGCAGTACCGCAGTGAGCATCg > 6:315216/1‑149 (MQ=255) gtTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTCCGATGGCCACCGACGCCACCGCCCTGTACCAGCAGTACCGCAGTGAGCATCg < 2:135703/147‑1 (MQ=255) ttCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTCCGATg < 7:174585/99‑1 (MQ=255) ttCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTCCGATg > 8:174585/1‑99 (MQ=255) tgagcagTTGGGCGCGGCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTCCGATGGCCACCGACGCCACCGCCCTGTACCAGCAGTACCGCAGTGAGCATCGGCt > 8:267500/7‑149 (MQ=255) ttGGGCGCGGCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTCCGATGGCCACCGACGCCACCGCCCTGTACCAGCAGTACCGCAGTGAGCATCGGCTGACCGCa < 7:267500/149‑1 (MQ=255) gCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTCCGATGGCCACCGACGCCACCGCCCTGTACCAGCAGTACCGCAGTGAGCATCGGCTGACCGCAGcc > 3:211852/1‑149 (MQ=255) | GTCAGGACGGCGGACGTGCTGTTGATCGAATCTACCTATGGCGATCGCCAGCATCCCGCCGAATCGACCGAGCAGTACCTTGCCAAGGTCATCAACGAAACGCTCCTGCGTCATGGCATTACCCTCGTACCCTCGTTCGCCGTTGGCCGCGCCCAACTGCTCATGTATTACCTGTACACGCTCAAGCGCGACCGGCTGATCCCTGATATCCCGATCTACCTGAACAGTCCGATGGCCACCGACGCCACCGCCCTGTACCAGCAGTACCGCAGTGAGCATCGGCTGACCGCAGCC > NC_002947/3725936‑3726229 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |