Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,951,159 | T→C | 100% | intergenic (‑123/+72) | PP_3486 ← / ← PP_3487 | cytochrome c/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,951,159 | 0 | T | C | 96.6% | 91.7 / ‑4.4 | 29 | intergenic (‑123/+72) | PP_3486/PP_3487 | cytochrome c/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (19/9); total (20/9) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.40e-01 | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
GAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTC‑‑TTATCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGC > NC_002947/3951026‑3951301 | gAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTC‑‑CTTTCGCGACGCAAgg > 1:205268/1‑149 (MQ=255) aaGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTC‑‑CTTTCGCGACGCAAGGc < 2:205268/149‑1 (MQ=255) tatCGCACGCCCGGTGGGAGGGGCCTTGCGTCGCTAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTC‑‑CTTTcg < 6:25989/107‑1 (MQ=37) tatCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTC‑‑CTTTcg > 5:25989/1‑107 (MQ=255) ggCCTTGCGTCCCCAAAGGCCTGCGATCCAGCCCCGGCAGTGGCAGCTCAAGCCCACAAAGAGGGTCGCGGTGCGCGCGC‑‑CTTGCGCCACCCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGa < 7:168283/149‑1 (MQ=255) aaGGGCTGCGCAGCAGCCCCGGCAGTGGCGGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTC‑‑CTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGc > 3:218630/1‑149 (MQ=255) ggCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTC‑‑CTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAg > 8:250335/1‑149 (MQ=255) cTGCGCAGCAGCCCCGTCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGAGCTCCGTTTTCCCGACGCAAGGCCGCACCCACAAAACCGGATTCCACAGAGGCCAATTCCACAGGCGGCCCATGATACTCACCGACCGGCCAg > 1:290689/1‑149 (MQ=255) gcgcAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTC‑‑CTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCac < 6:316174/134‑1 (MQ=255) gcgcAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTC‑‑CTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCac > 5:316174/1‑134 (MQ=255) cagcCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTC‑‑CTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGa < 1:130516/121‑1 (MQ=255) cagcCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTC‑‑CTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGa > 2:130516/1‑121 (MQ=255) gcCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTC‑‑CTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGGCaa > 6:183838/1‑149 (MQ=255) gCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTC‑‑CTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTg > 4:360614/1‑149 (MQ=255) tGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTC‑‑CTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATg > 7:241989/1‑149 (MQ=255) gCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTC‑‑CTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATgcg > 5:186571/1‑149 (MQ=255) aGCTCAAGTGCAGAAAGAGGGGAGCGCTGCGCGCTC‑‑CTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCt > 4:258954/1‑149 (MQ=255) cTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTC‑‑CTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATgcgc < 6:59717/146‑1 (MQ=255) cTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTC‑‑CTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATgcgc > 5:59717/1‑146 (MQ=255) cAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTC‑‑CTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTggg > 8:3756/1‑148 (MQ=255) aaGCGCAGAAAGAGGGGAGCGCTGCGCGCTC‑‑CTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTggg < 4:218630/147‑1 (MQ=255) aaGCGCAGAAAGAGGGGAGCGCTGCGCGCTC‑‑CTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGc > 5:290797/1‑148 (MQ=255) cgcAGAAAGAGGGGAGCGCTGCGCGCTC‑‑CTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATc > 3:103862/1‑149 (MQ=255) gcAGAAAGAGGGGAGCGCTGCGCGCTC‑‑CTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATTCTCACAGACCGGCCAGCGGCTGGTTCAACAGCTGCATGCGCTGGGCAATcg > 6:106584/1‑149 (MQ=39) aGAAAGAGGGGAGCGCTGCGCGCTC‑‑CTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATcgcc > 6:130906/1‑149 (MQ=255) gggAGCGCTGCGCGCTC‑‑CTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCgg < 5:35371/149‑1 (MQ=255) gggAGCGCTGCGCGCTC‑‑CTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCgg > 6:35371/1‑149 (MQ=255) aGCGCTGCGCGCTC‑‑CTTTCGCGACGCAAGGCCGCTCACACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTg > 1:247228/1‑148 (MQ=255) gcgcTC‑‑CTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGc < 3:360614/149‑1 (MQ=255) | GAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTC‑‑TTATCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGC > NC_002947/3951026‑3951301 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |