| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 284,586 | T→A | 6.2% | intergenic (+33/+30) | betT‑II → / ← atsK | choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 284,586 | 0 | T | A | 6.2% | 210.8 / 2.7 | 75 | intergenic (+33/+30) | betT‑II/atsK | choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase |
| Reads supporting (aligned to +/- strand): ref base T (31/37); new base A (3/2); total (35/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.59e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.70e-01 | |||||||||||
ACCTGAGCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCACGTCATTCTCCT > NC_002947/284438‑284734 | aCCTGAGCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACGTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCt < 5:144245/149‑1 (MQ=255) ccTGAGCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCtt > 2:242068/1‑149 (MQ=255) gAGCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGcc > 8:49568/1‑149 (MQ=255) aGCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGc < 6:329023/147‑1 (MQ=255) gCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGccc < 8:325877/148‑1 (MQ=255) gAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCcgc > 7:18783/1‑148 (MQ=255) aGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCTTCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGaa < 8:69793/149‑1 (MQ=255) aGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCACGGGCTTGCCCGCGAA‑GAgg < 2:153619/149‑1 (MQ=255) gCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGc > 5:154584/1‑149 (MQ=255) ccAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGa > 1:172717/1‑142 (MQ=255) ccAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGa < 2:172717/142‑1 (MQ=255) cAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGcc > 8:57494/1‑148 (MQ=255) cAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCa < 6:368093/149‑1 (MQ=255) aGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGaa > 4:176030/1‑141 (MQ=255) aGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGaa < 3:176030/141‑1 (MQ=255) tGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGc < 3:117721/148‑1 (MQ=255) aCCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAAc < 2:120274/149‑1 (MQ=255) aCCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGT‑CTGGCCTCTTCGCGGGCAAGCCCGCGaa > 7:88808/1‑131 (MQ=255) aCCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGT‑CTGGCCTCTTCGCGGGCAAGCCCGCGaa < 8:88808/131‑1 (MQ=255) gtggGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTa < 3:259304/149‑1 (MQ=255) gCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGCCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGaaa < 7:85542/149‑1 (MQ=255) cTACAGCAAGGAGCAGATCATCAACGCCCTCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAg < 7:168980/149‑1 (MQ=255) tACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGCA‑GAGGCCAGACA‑GGCAACCGCTAGAAAgg > 7:325880/1‑149 (MQ=255) aCAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGt > 7:172948/1‑149 (MQ=255) aGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCAAGCCCGCGAA‑GAGGCCa > 2:346507/1‑125 (MQ=255) aGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCAAGCCCGCGAA‑GAGGCCa < 1:346507/125‑1 (MQ=255) cAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAt > 2:285784/1‑149 (MQ=255) aGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAa‑gag < 4:123827/117‑1 (MQ=255) aGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAa‑gag > 3:123827/1‑117 (MQ=255) ggAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAATGAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑cc < 1:242068/149‑1 (MQ=255) gCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCaa < 8:172948/149‑1 (MQ=255) gCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCaa < 5:349967/149‑1 (MQ=255) gATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCACATAGCCGGCGTTCCCGGCAA‑TGGGCCAGAAA‑CGCAACCGGGATCAAGGTGCCT‑ACCCAAgg > 2:70182/1‑148 (MQ=255) atcaACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGt > 7:296906/1‑149 (MQ=255) tCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCAt > 6:167989/1‑148 (MQ=255) tCGACAAGTAAGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCAGTACTGGCCTCTTAGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCACCCGCAAGAAAGGTGAAT‑CCCCATGGCT‑GGTCGCCCGGTTCAt > 6:375628/1‑148 (MQ=255) gACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCa < 1:70182/148‑1 (MQ=255) cAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTg > 6:358966/1‑140 (MQ=255) cAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTg < 5:358966/140‑1 (MQ=255) tACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACccgccg > 2:255881/1‑149 (MQ=255) acaTGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTGTTCGCGGGCTTGCCCGCGAT‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTtcggtcgg < 3:270981/149‑1 (MQ=255) aTGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTcggtcggt > 4:221039/1‑148 (MQ=255) aTGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTa < 8:317297/149‑1 (MQ=255) cAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAat > 8:333301/1‑148 (MQ=255) cTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCAc < 7:333301/149‑1 (MQ=255) tGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGAGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCAcc > 6:367038/1‑149 (MQ=255) cACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCATCCCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCg < 1:285784/149‑1 (MQ=255) cACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTtcggt < 4:21693/132‑1 (MQ=255) cACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTtcggt > 3:21693/1‑132 (MQ=255) cTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑aa > 3:128698/1‑148 (MQ=255) cTGGGCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAatc < 7:140778/137‑1 (MQ=255) gTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAATGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATg > 1:118289/1‑149 (MQ=255) cGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATGCTg < 6:154584/149‑1 (MQ=255) gCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑aaa < 6:305477/142‑1 (MQ=255) gCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑aaa > 5:305477/1‑142 (MQ=255) gCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATGCTgg < 7:57494/149‑1 (MQ=255) gCTGACCAAGCTCTCCTGTCCGGGCCTGTTGGCGGGCTTGCCCTCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATGCTgg < 8:18783/149‑1 (MQ=255) cAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGATGGGTCGCCCGGTGCATCACCCGCCGGTtcggtcgg < 1:45460/120‑1 (MQ=255) cAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTtcggtcgg > 2:45460/1‑119 (MQ=255) cAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATGCTGGGTCAcg > 3:104066/1‑149 (MQ=255) aaGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATGCTGGGTCAcgc < 4:104066/149‑1 (MQ=255) ctttcctgGCCTCTGCCCGGCCTTGCCCGCGAA‑TAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAATGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTTGGTCGTTAATCATCCACCG‑‑‑C‑AAAATGCTGTGTCACGCGGTTGTcc < 8:232646/146‑1 (MQ=255) ctgtcctgGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATGCTg > 2:132827/1‑133 (MQ=255) ctgtcctgGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATGCTg < 1:132827/133‑1 (MQ=255) ctgtcctgGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATGCTGGGTCACGCGGTTGTcc < 1:255881/149‑1 (MQ=255) gtcctgGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACAGGGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATGCTGGGTCACGCGGTTGTccc > 1:256102/1‑149 (MQ=255) gtcctgGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATGCTgg > 8:347269/1‑132 (MQ=255) gtcctgGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATGCTgg < 7:347269/132‑1 (MQ=255) tgGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATGCTGGGTCACGCGGTTGTCCCAGAAc > 3:326498/1‑149 (MQ=255) gCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATGCTGGGTCACGCGGTTGTCCCAGAACGc > 2:321835/1‑149 (MQ=255) ctctTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCa > 1:233100/1‑149 (MQ=255) ctctTCGCGGGCAAGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCa > 2:239989/1‑149 (MQ=255) cgcgGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCACGTc < 3:221039/148‑1 (MQ=255) gcgGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCACGTCa < 7:49568/148‑1 (MQ=255) cgGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCACGTCAtt > 4:240889/1‑149 (MQ=255) cgGGCGTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCACGTCAtt < 8:296906/149‑1 (MQ=255) gggCTTGCCCGGGAA‑GAGGCCAGACA‑GGCAACCGCTTGAAAGTTGCAT‑CCCCAAGCAT‑GGTCGCCCGGTGCATAACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATGCTGGGTCACGCGTTTGTCCCAGAACGCCACGTCATtc < 5:375628/149‑1 (MQ=255) ttGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCATGGGGTCGAAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCACGTCAtt > 1:308151/1‑148 (MQ=255) ttGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATGCTGGGTCACGCGGTTGTcc > 8:264447/1‑127 (MQ=255) ttGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATGCTGGGTCACGCGGTTGTcc < 7:264447/127‑1 (MQ=255) ttGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCACGTCATTCTCCt > 7:322334/1‑149 (MQ=255) | ACCTGAGCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAA‑GAGGCCAGACA‑GGCAACCGCTAGAAAGGTGCAT‑CCCCAAGGAT‑GGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCG‑‑‑C‑AAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCACGTCATTCTCCT > NC_002947/284438‑284734 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |