| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,975,168 | G→T | 6.4% | intergenic (+89/+18) | PP_3504 → / ← PP_3505 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,975,168 | 0 | G | T | 6.4% | 251.8 / 6.2 | 78 | intergenic (+89/+18) | PP_3504/PP_3505 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (35/38); new base T (3/2); total (38/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.39e-01 | |||||||||||
GTGCGCGCCGAATTGTGTGAAAAGGGCTACGACCTGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTCCCAGGCGCACGGGCGCCAGTTCCATATCGACCAACAACGTGGCGCACGGCATCG > NC_002947/3975020‑3975313 | gTGCGCGCCGAATTGTGTGAAAAGGGCTACGACCTGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAg > 6:347934/1‑149 (MQ=255) cgcgcCGAATTGTGTGAAAAGGGCTACGACCTGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAgtgt < 3:132285/149‑1 (MQ=255) gcgcCGAATTGTGTGAAAAGGGCTACGACCTGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTACCCAATTGCGACAAAGTGTc < 2:122879/149‑1 (MQ=255) ggcGAATTGTGTGAAAAGGGCTACGACCTCCAACCGTGGTCGATGCAGAAGAAATATCGGCCAGCACAACAAGTGCATCCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCg > 6:105082/3‑148 (MQ=255) gAATTGTGTGAAAAGGGCTACGACCTGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑c < 1:206631/149‑1 (MQ=255) ttGTGTGAAAAGGGCTACGACCTGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTg > 1:56169/1‑149 (MQ=255) gtgtgAAAAGGGCTACGACCTGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGc < 2:72066/148‑1 (MQ=255) tgAAAAGGGCTACGACCTGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGt > 2:258014/1‑149 (MQ=255) tgAAAAGGGCTACGACCTGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGt > 3:275993/1‑149 (MQ=255) aaaaGGGCTACGACCTGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCg > 4:73659/1‑135 (MQ=255) aaaaGGGCTACGACCTGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCg < 3:73659/135‑1 (MQ=255) aaaaGGGCTACGACCTGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGtt > 6:357442/1‑148 (MQ=255) aaaaGGGCTACGACCTGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGtt > 6:249572/1‑148 (MQ=255) aGGGCTACGACCTGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAAt > 2:50413/1‑149 (MQ=255) cTACGACCTGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCa > 8:327451/1‑148 (MQ=255) cTACGACCTGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCAt > 8:118752/1‑149 (MQ=255) cTACGACCTGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTAGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCAt > 1:301572/1‑149 (MQ=255) tACGACCTGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCAt > 1:183356/1‑148 (MQ=255) cGACCTGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCa < 2:301572/148‑1 (MQ=255) ccTGCATCCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGCTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGc < 4:115104/130‑1 (MQ=255) ccTGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGCTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGc > 3:115104/1‑130 (MQ=255) cTGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACACTTTGTCGCaa > 2:334904/1‑124 (MQ=255) cTGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACACTTTGTCGCaa < 1:334904/124‑1 (MQ=255) cTGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGtt > 3:215896/1‑134 (MQ=255) cTGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGtt < 4:215896/134‑1 (MQ=255) tGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTg > 1:346770/1‑148 (MQ=255) aCCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAAttg < 7:118752/149‑1 (MQ=255) ccGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAAttgt > 1:67402/1‑149 (MQ=255) ccGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAAttgt > 7:277961/1‑149 (MQ=255) tGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGc < 2:60240/149‑1 (MQ=255) tGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCAGAAttgttg > 2:110908/1‑148 (MQ=255) gTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTc > 7:176628/1‑109 (MQ=255) gTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTc < 8:176628/109‑1 (MQ=255) gATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGt < 4:275993/148‑1 (MQ=255) gATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTg > 6:308382/1‑149 (MQ=255) gCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTAAAACTTCTCTGTTGCTGTTGTTGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCAATCACACTGAATTGTTGCAAGTGATg > 4:358404/1‑149 (MQ=255) ccGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTg < 7:280409/148‑1 (MQ=255) cGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGt < 7:327451/149‑1 (MQ=255) aaGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTaa > 4:356397/1‑149 (MQ=255) atatCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAAttgtt < 4:354824/130‑1 (MQ=255) cAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAAtt > 2:21870/1‑149 (MQ=255) aaaaaGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGAGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTg > 6:158284/4‑149 (MQ=255) acaaGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACGCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGc < 2:67402/149‑1 (MQ=255) acaaGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGc < 1:258014/149‑1 (MQ=255) aaGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGcc < 5:137129/148‑1 (MQ=255) aaGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGcc > 6:137129/1‑148 (MQ=255) gtgcgtgcATGGTCACGCACTTGTACAACTTCTCTGTTTCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAACCCCTGCGAGTTCAATCGATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCa < 1:110908/149‑1 (MQ=255) gtgcATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTg > 4:148047/1‑117 (MQ=255) gtgcATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTg < 3:148047/117‑1 (MQ=255) atgcACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTgcgcgc < 3:325115/146‑1 (MQ=255) gCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTcc > 1:162110/1‑147 (MQ=255) cACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCCCCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTCCCAg < 5:347934/149‑1 (MQ=255) ttGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGcc > 6:256522/1‑111 (MQ=255) ttGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTGCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGcc < 5:256522/111‑1 (MQ=255) gTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTCCCAGGCGCa > 2:177900/1‑149 (MQ=255) tACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTCCCAGGCGCAc > 5:282620/1‑149 (MQ=255) ttCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTgcgc > 3:50450/1‑128 (MQ=255) ttCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTgcgc < 4:50450/128‑1 (MQ=255) ttCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTCCCAGGCGCACGGgcgc < 5:105082/149‑1 (MQ=255) ctctGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTCCCAGGCGCACGGgcgc < 2:56169/147‑1 (MQ=255) ctctGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTCCCAGGCGCACGGgcgc < 2:346770/147‑1 (MQ=255) ctctGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTCCCAGGCGCACGGgcgc < 5:357442/147‑1 (MQ=255) ttgctgttgTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTCCCAGGCGCACGGGCGCCAGTTcc < 6:282620/149‑1 (MQ=255) ttgctgttgTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTCCCAGGCGCACGGGCGCCAGTTcc < 1:21870/149‑1 (MQ=255) gctgttgTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGGCCCAGGCGCACGGGCGCCAGTTCCa < 8:277961/148‑1 (MQ=255) tgGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTCCCAGGCGCACGGGCGCCAGTTCCATATCGAcc < 2:138612/149‑1 (MQ=255) tgGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTCCCAGGCGCACGGGCGCCAGTTCCATATCGAc < 5:249572/148‑1 (MQ=255) cAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCTTCCCAGGCGCACGGGCGCCAGTTCCATATCGACcaa < 3:358404/148‑1 (MQ=255) aCTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTCCCAGGCGCACGGGCGCCAGTTCCATATCGACcaacaa < 5:158284/149‑1 (MQ=255) tCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTCCCAGGCGCACGGGCGCCAGTTCCATATCGACCAACAACGTg > 7:59826/1‑149 (MQ=255) cccAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTCCCAGGCGCACGGGCGCCAGTTCCATATCGACCAACAACGTg < 2:162110/148‑1 (MQ=255) ccAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTCCCAGGCGCACGGGCGCCAGTTCCATATCGACCAACAACGTgg < 3:356397/148‑1 (MQ=255) ttGCGACACTTTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTCCCa > 5:122346/1‑105 (MQ=255) ttGCGACACTTTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTCCCa < 6:122346/105‑1 (MQ=255) ttGCGACACTTTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTCCCAGGCGCACGGGCGCCAGTTCCATATCGACCAACAACGTGGCGCAc > 8:281940/1‑149 (MQ=255) gACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTCCCAGGCGCACGGGCGCCAGTTCCata < 4:220838/124‑1 (MQ=255) gACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTCCCAGGCGCACGGGCGCCAGTTCCata > 3:220838/1‑124 (MQ=255) gACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTCCCAGGCGCACGGGCGCCAGTTCCATATCGACCAACAACGTGGCGCACGGCa > 4:299383/1‑149 (MQ=255) cAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTCCCAGGCGCACGGGCGCCAGTTCCATATCGACCAACAACGTGGCGCACGGCATc > 3:13481/1‑149 (MQ=255) aaaGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTCCCAGGCGCACGGGCGCCAGTTCCATATCGACCAACAACGTGGCGCACGGCATCg < 5:308382/149‑1 (MQ=255) | GTGCGCGCCGAATTGTGTGAAAAGGGCTACGACCTGCAACCGTGGTCGATGCCGAAGTAATATCGGCCAGCACAACAAGTGCGTGCATGGTCACGCACTTGTACAACTTCTCTGTTGCTGTTGTGGCAACTTTCCCAATTGCGACAAAGTGTCGCAA‑‑CCTGCCAGTTCAATCCATCACCCTGAATTGTTGCAAGTGCTGGTAATCAGCCTGCAATTGTTCTGCCAGACGCTGCGCGCGTCCCAGGCGCACGGGCGCCAGTTCCATATCGACCAACAACGTGGCGCACGGCATCG > NC_002947/3975020‑3975313 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |