Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,980,420 | A→G | 7.0% | Y71H (TAT→CAT) | cobN ← | aerobic cobaltochelatase subunit CobN |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,980,420 | 0 | A | G | 7.0% | 164.4 / 2.2 | 57 | Y71H (TAT→CAT) | cobN | aerobic cobaltochelatase subunit CobN |
Reads supporting (aligned to +/- strand): ref base A (25/28); new base G (2/2); total (27/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.63e-01 |
TCCGGGCGGTCATCGCCCGGCACCAGAATCAGCTGCACGCCACGGGCGGCCAGCTCGACCAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCGGTGTCGGCGAGCAAGGCCAGGTGTGAATCGCCGCTGCAGAGAATCACCAGCTCGGCGGGT > NC_002947/3980272‑3980562 | tccgggCGGTCATCGCCCGGCACCAGAATCAGCTGCACGCCACGGGCGGCCAGCTCGACCAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATa < 6:279578/149‑1 (MQ=255) ggTCATCGCCCGGCACCAGAATCAGCTGCACGCCACGGGCGGCCAGCTCGACCAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCg < 6:353984/149‑1 (MQ=255) aTCGCCCGGCACCAGAATCAGCTGCACGCCACGGGCGGCCAGCTCGACCAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGAcc < 8:226509/148‑1 (MQ=255) tCGCCCGGCACCAGAATCAGCTGCACGCCACGGGCGGCCAGCTCGACCAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATAc > 1:250783/1‑138 (MQ=255) tCGCCCGGCACCAGAATCAGCTGCACGCCACGGGCGGCCAGCTCGACCAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATAc < 2:250783/138‑1 (MQ=255) tCGCCCGGCACCAGAATCAGCTGCACGCCACGGGCGGCCAGCTCGACCAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGa < 7:335056/149‑1 (MQ=255) gCCCGGCACCAGAATCAGCTGCACGCCTCGGTCGGCCAGCTCGACCAGTTGTTCGACGCCGTAGCGACAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACCTGTATGTCGAccagg < 4:40916/148‑4 (MQ=255) gCCCGGCACCAGAATCAGCTGCACGCCACGGGCGGCCAGCTCGACCAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAg < 8:140033/148‑1 (MQ=255) ccGGCACCAGAATCAGCTGCACGCCACGGGCGGCCAGCTCGACCAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCa < 5:237877/149‑1 (MQ=255) cAGAATCAGCTGCACGCCACGGGCGGCCAGCTCGACCAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCt > 3:360268/1‑149 (MQ=255) aaTCAGCTGCACGCCACGGGCGGCCAGCTCGACCAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCa < 2:58333/149‑1 (MQ=255) cTGCACGCCACGGGCGGCCAGCTCGACCAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCa > 8:142984/1‑149 (MQ=255) tGCACGCCACGGGCGGCCAGCTCGACCAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCAt > 3:205767/1‑149 (MQ=255) aCGCCACGGGCGGCCAGCTCGACCAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCgg < 8:269843/149‑1 (MQ=255) gCCACGGGCGGCCAGCTCGACCAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGt > 8:263269/1‑149 (MQ=255) gcctgggCGGCCAGCTCGACCAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGtt < 7:120240/145‑1 (MQ=255) gcggcCAGCTCGACCAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAg > 1:181916/1‑149 (MQ=255) ggcCAGCTCGACCAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGgc < 3:350685/149‑1 (MQ=255) cAGCTCGACCAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGgcg > 4:96332/1‑147 (MQ=255) cAGCTCGACCAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCa < 4:360268/149‑1 (MQ=255) gCTCGACCAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAgg < 1:360687/149‑1 (MQ=255) gACCAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTg < 4:205767/148‑1 (MQ=255) gACCAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTg < 8:119134/148‑1 (MQ=255) gACCAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTg > 7:119134/1‑148 (MQ=255) ccAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTggg > 6:258808/1‑148 (MQ=255) aGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGAAATTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGCGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGa > 1:291214/1‑147 (MQ=255) cGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAAt > 8:114842/1‑149 (MQ=255) tAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGGCCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTg < 1:155009/149‑1 (MQ=255) ccAGTACCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTg > 4:251973/1‑149 (MQ=255) cAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGc < 3:96332/149‑1 (MQ=255) cAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGGGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGc < 3:104803/149‑1 (MQ=255) gTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCgg > 8:68432/1‑149 (MQ=255) gTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCgg > 3:237618/1‑149 (MQ=255) aaCGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGTCCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCGGTGTCgg > 3:190205/1‑149 (MQ=255) aaCGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCGGTGTCgg > 8:211546/1‑149 (MQ=255) cACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCGGTGTCGGCGAg > 7:234022/1‑148 (MQ=255) cACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCGGTGTCGGCGAGc < 7:263269/149‑1 (MQ=255) aGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCGGTGTCGGCGAGCAAGGCCAg < 6:77420/149‑1 (MQ=255) gACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCGGTGTCGGCGAGCAAGGCCAGgtg > 4:359123/1‑149 (MQ=255) acCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCGGTGTCGGCGAGCAAGGGCAGGtgtg > 6:180834/1‑148 (MQ=255) cAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTc > 6:174290/1‑105 (MQ=255) cAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTc < 5:174290/105‑1 (MQ=255) gATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCGGTGTCGGCGAGCAAGGCCAGGTGTGAATcgc > 1:269071/1‑149 (MQ=255) tGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCGGTGTCGGCGAGCAAGGCCAGGTGTGAATcgccg < 7:142984/149‑1 (MQ=255) gACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGTCCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCGGTGTCGGCGAGCAAGGCCAGGTGTGAATcgccg < 4:190205/148‑1 (MQ=255) gACCCTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCGGTGTCGGCGAGCAAGGCCAGGTGTGAATcgccgc < 8:234022/149‑1 (MQ=255) cTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCGGTGTCGGCGAGCAAGGCCAGGTGTGAATCGCCGCTg > 7:75804/1‑148 (MQ=255) ttGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCGGTGTCGGCGAGCAAGGCCAGGTGTGAATCGCCGCTg > 6:249320/1‑147 (MQ=255) ggcgtggcgCAGCACCTGGTCGAGATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCGGTGTCGGCGAGCAAGGCCAGGTGTGAATCGCCGCTGCa > 4:153851/1‑147 (MQ=255) tggcgCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCGGTGTCGGCGAGCAAGGCCAGGTGTGAATCGCCGCTGCAGAGAAt < 3:251973/149‑1 (MQ=255) gcgcAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCGGTGTCGGCGAGCAAGGCCAGGTGTGAATCGCCGCTGCAGAGAATc < 2:181916/148‑1 (MQ=255) cagcaCCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCGGTGTCGGCGCGCAAGGCCAGGTGTGAATCGCCGCTGCAGAGAATCAc > 8:237830/1‑147 (MQ=255) cagcaCCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCGGTGTCGGCGAGCAAGGCCAGGTGTGAATCGCCGCTGCAGAGAATCACCa < 4:237618/149‑1 (MQ=255) caCCTGGTCGACATGCAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCGGTGTCGGCGAGCAAGGCCAGGTGTGAATCGCCGCTGCAGAGAATCACCAGCt > 5:186074/1‑149 (MQ=255) ctcggTCGACCTGTATGTCGACCGAGGCATGGTTCCGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCGGTGTCGGCGAGCAAGGCCAGGTGTGAATCGCCGCTGCAGAGAATCACCAGCTcg > 2:335092/4‑149 (MQ=255) gTCGACATGCAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCGGTGTCGGCGAGCAAGGCCAGGTGTGAATCGCCGCTGCAGAGAATCACCAGCTcggcgg < 6:186074/149‑1 (MQ=255) gTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCGGTGTCGGCGAGCAAGGCCAGGTGTGAATCGCCGCTGCAGAGAATCACCAGCTcggcg < 2:269071/148‑1 (MQ=255) gACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCGGTGTCGGCGAGCAAGGCCAGGTGTGAATCGCCGCTGCAGAGAATCACCAGCTCGGCGGgt < 7:68432/148‑1 (MQ=255) | TCCGGGCGGTCATCGCCCGGCACCAGAATCAGCTGCACGCCACGGGCGGCCAGCTCGACCAGTTGTTCGACGCCGTAGCGCCAGTAGCCAACGCCACCGTGCAGCGACACCAGGATGACCTTGGCGTGGCGCAGCACCTGGTCGACATACAGGTCGACCGAGGCATGGTTCTGCACCTGCATCGGGTTGGCCAGGCGCAGGCTGGGAAAGTCTTCGGGCAATTGCTCTGCGGTGTCGGCGAGCAAGGCCAGGTGTGAATCGCCGCTGCAGAGAATCACCAGCTCGGCGGGT > NC_002947/3980272‑3980562 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |