Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,170,450 | C→A | 6.9% | R58S (CGC→AGC) | PP_3669 → | LysR family transcriptional regulator |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,170,450 | 0 | C | A | 6.9% | 175.1 / 3.9 | 58 | R58S (CGC→AGC) | PP_3669 | LysR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base C (32/22); new base A (2/2); total (34/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.63e-01 |
ATGAACCTGCTGGTGCTGTTCGAAGCCCTGATGATCGAACGCAACCTGACCCGCGTGGGTGAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCAACAGCTGCAACGTGTTCCGCCTGGGCCTTTC > NC_002947/4170309‑4170598 | aTGAACCTGCTGGTGCTGTTCGAAGCCCTGATGATCGAACGCAACCTGACCCGCGTGGGTGAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCGGATCAGCAGCgg < 1:35854/149‑1 (MQ=255) gAACCTGCTGGTGCTGTTCGAAGCCCTGATGATCGAACGCAACCTGACCCGCGTGGGTGAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCGGATCAGc > 1:176331/1‑142 (MQ=255) gAACCTGCTGGTGCTGTTCGAAGCCCTGATGATCGAACGCAACCTGACCCGCGTGGGTGAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCGGATCAGc < 2:176331/142‑1 (MQ=255) aaCCTGCTGGTGCTGTTCGAAGCCCTGATGATCGAACGCAACCTGACCCGCGTGGGTGAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCg > 1:158983/1‑149 (MQ=255) aaCCTGCTGGTGCTGTTCGAAGCCCTGATGATCGAACGCAACCTGACCCGCGTGGGTGAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCg > 8:160376/1‑149 (MQ=255) ccTGCTGGTGCTGTTCGAAGCCCTGATGATCGAACGCAACCTGACCCGCGTGGGTGAAAGAAGATTTTTATCACCCAATCCACCGTCAGCGCCGCCATCGCCCGCATGCGCGAGCTGTACGACGACCCGATCGTGATCCGCAGCGGCCg > 1:290443/1‑149 (MQ=255) ccTGCTGGTGCTGTTCGAAGCCCTGATGATCGAACGCAACCTGACCCGCGTGGGTGAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCggg > 3:192840/1‑149 (MQ=255) ctgGTGCTGTTCGAAGCCCTGATGATCGAACGCAACCTGACCCGCGTGGGTGAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCAt < 1:14691/149‑1 (MQ=255) tGTTCGAAGCCCTGATGATCGAACGCAACCTGACCCGCGTGGGTGAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAacc > 3:326301/1‑148 (MQ=255) gTTCGAAGCCCTGATGATCGAACGCAACCTGACCCGCGTGGGTGAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAaccca > 5:59294/1‑149 (MQ=255) ttCGAAGCCCTGATGATCGAACGCAACCTGACCCGCGTGGGTGAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCggg > 6:164031/1‑136 (MQ=255) ttCGAAGCCCTGATGATCGAACGCAACCTGACCCGCGTGGGTGAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCggg < 5:164031/136‑1 (MQ=255) ttCGAAGCCCTGATGATCGAACGCAACCTGACCCGCGTGGGTGAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAaccca < 2:290443/148‑1 (MQ=255) ttCGAAGCCCTGATGATCGAACGCAACCTGACCCGCGTGGGTGAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAaccca < 4:192840/148‑1 (MQ=255) gAAGCCCTGATGATCGAACGCAACCTGACCCGCGTGGGTGAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAacccaccc > 5:253145/1‑148 (MQ=255) gAAGCCCTGATGATCGAACGCAACCTGACCCGCGTGGGTGAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAAcccacccc > 5:66610/1‑149 (MQ=255) aGCCCTGATGATCGAACGCAACCTGACCCGCGTGGGTGAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAAcccaccccac < 4:201682/149‑1 (MQ=255) cccTGATGATCGAACGCAACCTGACCCGCGTGGGTGAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACgg < 2:158983/149‑1 (MQ=255) gatgatCGAACGCAACCTGACCCGCGTGGGTGAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCa > 3:76154/1‑149 (MQ=255) gCAACCTGACCCGCGTGGGTGAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCttt > 8:119576/1‑149 (MQ=255) gatcttGACCCGGGTGGGTGAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGGCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACGCCACGGGCCATGCAGATCTTTg < 7:217220/144‑1 (MQ=255) cAACCTGACCCGCGTGGGTGAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTg < 4:76154/149‑1 (MQ=255) tGACCCGCGTGGGTGAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGa > 7:63839/1‑148 (MQ=255) gACCCGCGTGGGTGAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTg > 8:217220/1‑143 (MQ=255) gAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCAt > 1:253410/1‑149 (MQ=255) cTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGt < 4:326301/149‑1 (MQ=255) cTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGt < 6:66610/149‑1 (MQ=255) aTCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCCCCCCACGGGCCATGCAGATCTTTGCTGACCTGGGCCCGGCCATGGACGTGATTTc > 5:256822/1‑149 (MQ=255) aCCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGc > 6:255828/1‑149 (MQ=255) aCCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCCACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGCCCCGGCCATGGCCGTGAGTTCCGc > 8:160765/1‑149 (MQ=255) cccAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCt < 7:119576/149‑1 (MQ=255) cccAATCCACCGTCAGCACCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCt > 2:163149/1‑149 (MQ=255) cAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGc < 6:59294/149‑1 (MQ=255) acaccACCGTCAGCGCATCCATCGCCAGCCAGCGCGAGCTGTTCGACGACCCGCAGCTGATCCGCAGCGGCCGGGCCAACGAGCCCACCCCAGGGGCCTTGCAGATCTTTTGAGAACTGGGCCCCGCCATGGAAGTGATTTCCGCttc > 8:338169/4‑146 (MQ=255) ccGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGc < 2:253410/149‑1 (MQ=255) cccTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTc > 6:239125/1‑124 (MQ=255) cccTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTc < 5:239125/124‑1 (MQ=255) gcccgccTGCGCGAGCTGTTCCACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTc < 6:321598/147‑1 (MQ=255) cTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGc > 5:180929/1‑149 (MQ=255) cgcgAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCg > 6:132047/1‑112 (MQ=255) cgcgAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCg < 5:132047/112‑1 (MQ=255) gcgAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGt > 2:132403/1‑103 (MQ=255) gcgAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGt < 1:132403/103‑1 (MQ=255) gcgAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCaa > 7:66589/1‑148 (MQ=255) tGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCAACAGCTg > 8:166881/1‑148 (MQ=255) ttCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGACCCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCAACAGCTGCaa > 5:266647/1‑149 (MQ=255) cgacgaCCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCAACAGCTGCAAc < 7:166881/148‑1 (MQ=255) gacCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCAACAGCTGCAACGTGtt > 2:56515/1‑149 (MQ=255) acCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCAACAGCTGCAACGTGTTc > 6:208731/1‑149 (MQ=255) gctgctGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCAACAGCTGCAACGTGTTCCGcc > 3:159382/1‑149 (MQ=255) gctgcgGATCAGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCAACAGCTGCAACGTGTTCCGcc > 2:240103/1‑149 (MQ=255) ctgctgATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCAACAGCTGCAACGTGTTCCGCCt < 7:160376/149‑1 (MQ=255) gctgATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGTAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCAACAGCTGCAACGTGTTCCGCCTgg > 5:337911/1‑149 (MQ=255) ctgATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCTGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCAACAGCTGCAACGTGTTCCGCCTgg < 6:139645/148‑1 (MQ=255) ctgATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCAACAGCTGCAACGTGTTCCGCCTggg < 8:63839/149‑1 (MQ=255) tgATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCAt < 2:289702/94‑1 (MQ=255) tgATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCAt > 1:289702/1‑94 (MQ=255) tgATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCAACAGCTGCAACGTGTTCCGCCTGGGc > 6:210498/1‑149 (MQ=255) cGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCAACAGCTGCAACGTGTTCCGCCTGGGCCTTTc > 3:147784/1‑149 (MQ=255) | ATGAACCTGCTGGTGCTGTTCGAAGCCCTGATGATCGAACGCAACCTGACCCGCGTGGGTGAA‑‑AAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCAACAGCTGCAACGTGTTCCGCCTGGGCCTTTC > NC_002947/4170309‑4170598 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |