Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,301,579 | G→C | 8.2% | intergenic (+69/‑1231) | PP_3774 → / → PP_5627 | hypothetical protein/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,301,579 | 0 | G | C | 8.2% | 146.8 / 4.3 | 49 | intergenic (+69/‑1231) | PP_3774/PP_5627 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (22/23); new base C (2/2); total (24/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.50e-01 |
GGTCGACTACACCGACGCAACCCCCGCCGAGGACGGCTCGATCTGCATCATCAGCGAGCTCTCGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGTTACTCCAGTGGGCGCTTGTGATAACTATAACGCTCGGCATTGGATGCCCGCGATGGGTCCGGCGGGCCTGATCTCTGCC > NC_002947/4301432‑4301722 | ggTCGACTACACCGACGCAACCCCCGCCGAGGACGGCTCGATCTGCATCATCAGCGAGCTCTCGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCgggg < 3:68156/149‑1 (MQ=255) cGACTACACCGACGCAACCCCCGCCGAGGACGGCTCGATCTGCATCATCAGCGAGCTCTCGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGgggctg < 8:281102/149‑1 (MQ=255) acacCGACGCAACCCCCGCCGAGGACGGCTCGATCTGCATCATCAGCGAGCTCTCGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCtt < 8:226955/149‑1 (MQ=255) cacCGACGCAACCCCCGCCGAGGACGGCTCGATCTGCATCATCAGCGAGCTCTCGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCtt < 2:226323/148‑1 (MQ=255) cacCGACGCAACCCCCGCCGAGGACGGCTCGAACTGCATCATCAGCGAGCTATCGCTCATACATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATCAATGCAAAAACCCCAGCGCCGGGCTGGCCTTc > 6:358175/1‑149 (MQ=255) acCGACGCAACCCCCGCCGAGGACGGCTCGATCTGCATCATCAGCGAGCTCTCGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTc > 7:219989/1‑148 (MQ=255) acCGACGCAACCCCCGCCGAGGACGGCTCGATCTGCATCATCAGCGAGCTCTCGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCt < 5:81964/149‑1 (MQ=255) acCGACGCAACCCCCGCCGAGGACGGCTCGATCTGCATCATCAGCGAGCTCTCGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCt < 4:117304/149‑1 (MQ=255) gACGCAACCCCCGCCGAGGACGGCTCGATCTGCATCATCAGCGAGCTCTCGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCCCCGCGCTGGGCtttttgc < 5:254940/149‑6 (MQ=255) aCCCCCGCCGAGGACGGCTCGATCTGCATCATCAGCGAGCTCTCGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTgg < 2:209590/149‑1 (MQ=255) cccccGCCGAGGACGGCTCGATCTGCATCATCAGCGAGCTCTCGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCCCCgcgctgggc > 8:32416/1‑135 (MQ=255) cccccGCCGAGGACGGCTCGATCTGCATCATCAGCGAGCTCTCGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCCCCgcgctgggc < 7:32416/135‑1 (MQ=255) gccgAGGACGGCTCGATCTGCATCATCAGCGAGCTCTCGCTCATCCATCACTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGa > 7:139249/1‑148 (MQ=255) ggCTCGATCTGCATCATCAGCGAGCTCTCGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTc > 4:239805/1‑149 (MQ=255) cTCGATCTGCATCATCAGCGAGCTCTCGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTGTCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCCCCGCGCTGGGCttttt < 2:74789/124‑4 (MQ=255) cTCGATCTGCATCATCAGCGAGCTCTCGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTGTCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCCCCGCGCTGGGCttttt > 1:74789/1‑121 (MQ=255) cTCGATCTGCATCATCAGCGAGCTCTCGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAg > 3:240554/1‑128 (MQ=255) cTCGATCTGCATCATCAGCGAGCTCTCGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAg < 4:240554/128‑1 (MQ=255) aTCTGCATCATCAGCGAGCTCTCGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAg > 3:108912/1‑149 (MQ=255) catcatCAGCGAGCTCTCGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCtt > 6:1722/1‑148 (MQ=255) catcaGCGAGCTCTCGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTAACAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTaca > 1:214595/1‑149 (MQ=255) tcaGCGAGCTCTCGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTacaca > 3:211802/1‑149 (MQ=255) gCGAGCTCTCGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTTGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTg < 3:239805/149‑1 (MQ=255) gCTCTCGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACt < 8:219989/149‑1 (MQ=255) tctcGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTg > 5:124459/1‑148 (MQ=255) tcGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGaa > 4:72904/1‑149 (MQ=255) gCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGt > 7:206479/1‑149 (MQ=255) gCTCATCCATCGCTGAACGTCGATGACCAGCCCTGCTATCTAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCGCAGCGCTGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGaa < 1:143101/147‑1 (MQ=255) tCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGtt > 8:139750/1‑148 (MQ=255) atccatcGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGTTa < 4:211802/147‑1 (MQ=255) tccatcACTGAACGTCGATGCCCAGCCCTGCTATCATAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGTTACTc < 8:139249/149‑1 (MQ=255) tcGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGTTACTCCAGt > 5:120217/1‑149 (MQ=255) gAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGTTACTCCAGTGGgcg > 5:137773/1‑149 (MQ=255) cGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGTTACTCCAGTGGGCGCtt < 6:137773/149‑1 (MQ=255) cGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTAACAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGTTACTCCAGTGGGCGCtt < 2:214595/149‑1 (MQ=255) gTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGTTACTCCAGTGGGCGCTtg > 1:136447/1‑149 (MQ=255) cccAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGTTACTCCAGTGGGCGCTTGTGATaa < 4:108912/148‑1 (MQ=255) gCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGTTACTCCAGT‑GGCGCTTGTGATAACTATaa < 6:120217/149‑1 (MQ=255) gCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGTTACTCCAGTgg < 6:312573/126‑1 (MQ=255) gCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGTTACTCCAGTgg > 5:312573/1‑126 (MQ=255) tCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGTTACTCCAGTGGGCGCTTGTGATAACTATAACGCTCgg < 2:93609/148‑1 (MQ=255) aaaaCCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGTTACTCCAGTGGGGGCTTGTGATAACTATAACGCTCGGCAt > 7:22148/1‑149 (MQ=255) aaCCCCTCATGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGTTACTCCAGTTGGCGCTTGTGATAACTATAACGCTCGGCATTg < 8:206479/149‑1 (MQ=255) aaCCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGTTACTCCAGTGGGTGCTTGTGATAACTATAACGCTCGGCATTg < 8:22148/149‑1 (MQ=255) cTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGTTACTCCAGTGGGCGCTTGTGATAACTATAACGCTCGGCATTGGATGc < 5:219144/149‑1 (MQ=255) gggCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGTTACTCCAGTGGGCGCTTGTGATAACTATAACGCTCGGCATTGGATGCCcgc > 3:308384/1‑149 (MQ=255) gTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGTTACTCCAGTGGGCGCTTGTGATAACTATAACGCTCGGCATTGGATGCCCGCGATg > 3:81641/1‑149 (MQ=255) aTGAATGCAAAAAGCCCCGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGTTACTCCAGTGGGCGCTTGTGATAACTATAACGCTCGGCATTGGATGCCCGCGATGGGTcc > 3:70562/1‑149 (MQ=255) atagaaGCCCAGCCCCGCGCTGGGCTTCTATCTGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGTTACTCCAGTGGGCGCTTGTGATAACTATAACGCTCGGCATTGGATGCCCGCGATGGGTCCGGCGGGc > 2:280926/5‑149 (MQ=38) aaaGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGTTACTCCAGTGGGCGCTTGTGAt > 8:215107/1‑101 (MQ=255) aaaGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGTTACTCCAGTGGGCGCTTGTGAt < 7:215107/101‑1 (MQ=255) gcgcGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGTTACTCCAGTGGGCGCTTGTGATAACTATAACGCTCGGCATTGGATGCCCGCGATGGGTCCGGCGGGCCTGATCTctgc < 6:124459/149‑1 (MQ=255) cgcgGGGCTGGGCTTCTATCATCTTGGCTGAACAGTAATTCCGCCAGCCTTTACACACTGTACTGGAAGTTACTCCAGTGGGCGCTTGTGTTAACTATAACGCTCGGCATTGGATGCCCGCGATGGGTCCGGCGGGCCTGATCTctgcc < 4:308384/149‑1 (MQ=255) | GGTCGACTACACCGACGCAACCCCCGCCGAGGACGGCTCGATCTGCATCATCAGCGAGCTCTCGCTCATCCATCGCTGAACGTCGATGCCCAGCCCTGCTATCAAAACCCCTCAGGGCGTCGCATGAATGCAAAAAGCCCAGCGCGGGGCTGGGCTTCTATCAGCTGGGCTGAACAGTACTTCCGCCAGCCTTTACACACTGTACTGGAAGTTACTCCAGTGGGCGCTTGTGATAACTATAACGCTCGGCATTGGATGCCCGCGATGGGTCCGGCGGGCCTGATCTCTGCC > NC_002947/4301432‑4301722 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |