| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,340,090 | A→T | 14.3% | intergenic (+75/‑256) | ribAB‑II → / → PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,340,090 | 0 | A | T | 14.3% | 80.9 / 8.1 | 46 | intergenic (+75/‑256) | ribAB‑II/PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base A (14/22); new base T (3/3); total (21/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.72e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.64e-02 | |||||||||||
ATACGCGGGGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGC > NC_002947/4339943‑4340228 | aTACGCGGGGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTACCCGCGAATGCGAGGGTGACACCACCGAc < 3:356526/149‑1 (MQ=255) ggCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTACCCGCGAATGCGAGTGTGACACCACCGACGCATTcgc < 7:233900/149‑1 (MQ=255) ggCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTcgc < 6:174514/149‑1 (MQ=255) ggCTGGCGGCCTATGAGCTGGAGGTGCTGCAGAGCAACCCGTTCGACCCGGGTATGGATGGCTCACAACACACAACCAATTTATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTACCCGCGAATGCGATGGTGACACCACCGACGCATTcgc < 7:232037/149‑1 (MQ=38) gCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGAATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTcgc > 2:219851/1‑148 (MQ=255) cTGGCGGGCTATGAGCTGGAGGTGGTGCATAGCATCCCGTTCGTCCCGGGGTTGGATGGCTGAGAACACACAAGGAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCgg < 8:283595/149‑1 (MQ=255) cTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGAGCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCgg < 7:330574/149‑1 (MQ=25) cTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCgg < 7:98182/149‑1 (MQ=255) gCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATCGCTCAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAAcc < 5:24870/149‑1 (MQ=255) tATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTACCCGCGAATGCGAGGGTGACACCACCGCCGCATTCGCCGGTAAACCCg > 1:45492/1‑149 (MQ=255) tGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCt < 3:91952/149‑1 (MQ=255) ggAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTACCCGCGAATGCGAGGGTGACACCCCCGGCGCCTTCGCGGGTAAACCCGCTCCTACa > 5:177471/1‑149 (MQ=255) gAGGTGGGCCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTCAGAACAAACAAGCAATTTATTTCGCGGGGCCCTGTAGGAGCGGG‑TTTACCCGCTAATGCGAGGGTTACACCACCGACGCATTCGCGGTTAAACCCGCTCCTACa < 2:55793/148‑1 (MQ=37) ccGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTAACCGCGAATGCGAGGGTGAAACCCCCGACGCATTAGCGGGTAAAACCCCAGCTACAGGGCCCTTGGTGCTTTTGa > 5:332120/1‑149 (MQ=38) gTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTAACCGCGACTGCGCGGGTGACACCACCGACGCATTAGCGGGGAAACCCGCGCCGACAGGGCCCGTGGTGGGTTTGa > 6:73418/1‑147 (MQ=37) ccGGGGATGGATGGCTTAGAACACACAAGAAATTGTTTTAGCGGGGCCCTGTAGGAGCGGG‑TTTACCCGCTAATGCGAGGGTGACACCACCGACGCATTCGCGGTTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGa < 2:45492/149‑1 (MQ=38) tggatggCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTAACCGCGAATGCGAGGGTGGCACCACCGACGCAATAGCGGGTAAACCCGCTCCTACAGGGCCCGTGGTGGTTTTGACACGGCCGAGTGAttg > 5:107971/1‑147 (MQ=37) gatggCTGAGAACACACACGCAATTTATTTCGCGGGGCCCTGTAGGAGCGGG‑TTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGcc < 5:73418/149‑1 (MQ=255) cTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTTACCCCCAAAT‑CGAGGGGGGCCCCACCCCCGCCTTAGCGGGGAAACCCCCGCCGACAAGGGCCGTGGGGGTTTTTAGAGGGGGGGGTGGTGGGCggg > 8:182590/1‑146 (MQ=255) cTGACAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGCGCGGG‑TTTACCCGCTAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGt < 7:182590/147‑1 (MQ=255) gataaCACACATGCATTTTATTTCGGGGGGCCGTGTTGGCGGGGG‑TTTACCGGCTATTGCTTGGGTTACACCACCGACGCTTTCGCGGTTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGc < 6:332120/145‑1 (MQ=255) acacaAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTACCCGTGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAAcc > 8:319508/1‑89 (MQ=255) acacaAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAAcc < 7:319508/89‑1 (MQ=255) acaAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTAACCGCGCATGGGAGGGTGGCACCCCCGCCGCATTAGCGGGGAAACCCCCGGCGACAGGGCCCGTGGTGGTTTTGACGGGGCGGAGTGATGGCCGGTGGCCCCCTaac > 4:111120/1‑146 (MQ=255) aaGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTAACCGCGAATGCGAGGGTGACACCCCCGACGCATTAGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACctct > 5:173908/1‑149 (MQ=255) accaagggCCCTGTAGGAGCGGG‑TTTAACCGCGAATGGGTCGGTGGTGTGACCCACGCCTTAGCGGGTGAACCCGCTCCGACAGGGCCCGTGGTGGTTTTGACAGGGCGGGGTGATGGGCGGTCGCCCCCAACCTCTTGCCAAAATAtt > 2:262928/6‑149 (MQ=9) aGCGGGGCCCTGTAGGCGGGTG‑TTTACCCGCTAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCtt < 7:283107/148‑1 (MQ=255) ggggggCCCTGTTGGTGCGGG‑TTTACCCGGTAATGGGAGGGTGACACCACCGACGAATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTg < 6:107971/146‑1 (MQ=38) cGGGGCCGTTTAGGAGGGGT‑TTTACCCGCTAATGGGTGGGTTACCCCACCGACCAATTCGGGTGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGa < 1:120607/149‑1 (MQ=255) ccgtGTAGGCGCGGG‑TTTACCCGCTAAGGCGTGGGTGACACCACCGACGCATTCGCGGTTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATAcc < 3:123612/146‑1 (MQ=38) aGGAGCGGG‑TTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTAGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGc > 8:61259/1‑105 (MQ=255) ggAGCGGG‑TTAACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGTTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACGGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCataata < 3:111120/148‑1 (MQ=255) ccGTGAATGCGTGGGTGACACCACCGACGCTTTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGa < 6:177471/149‑1 (MQ=255) ccGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTg < 5:374933/122‑1 (MQ=21) ccGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTg > 6:374933/1‑122 (MQ=21) ccGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGa > 5:147229/1‑149 (MQ=255) cgcgAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCCCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAAAACCATAATATGATAGACGGTAGAc > 1:128626/1‑149 (MQ=21) cgcgAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGAAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGAc < 1:262928/149‑1 (MQ=25) gcgAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGAcc > 5:228545/1‑149 (MQ=25) gcgAATGCGAGGGTGACACCACCGATGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGAcc > 1:104921/1‑149 (MQ=255) gcgAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCGTTTGCCAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATAAGATATCCCGTAGccc > 6:11838/1‑149 (MQ=255) cgAATGCGAGGGTGACACCACCGATGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCt < 2:104921/149‑1 (MQ=255) gCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATAc > 2:95595/1‑120 (MQ=255) gCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATAc < 1:95595/120‑1 (MQ=255) gCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGt > 5:5961/1‑149 (MQ=255) gACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGc > 4:57870/1‑149 (MQ=255) | ATACGCGGGGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGC > NC_002947/4339943‑4340228 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |