| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,349,034 | T→G | 5.6% | intergenic (‑399/+75) | PP_3820 ← / ← galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,349,034 | 0 | T | G | 5.6% | 255.1 / 2.2 | 81 | intergenic (‑399/+75) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (40/36); new base G (2/3); total (42/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.68e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCCAGCATTTTGCCTCGGGCTTCCTTCAGATTCGCGGTCACCCGCGACACCCTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTGTAGTAGTTCTCGAAGCAGAAGTTGGTCGCGTCGATGTAGCCTTC > NC_002947/4348890‑4349174 | gCCAGCATTTTGCCTCGGGCTTCCTTCAGATTCGCGGTCACCCGCGACACCCTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTAcg > 8:224748/1‑149 (MQ=32) aTTTTGCCTCGGGCTTCCTTCAGATTCGCGGTCACCCGCGACACCCTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAc < 2:110800/149‑1 (MQ=32) aTTTTGCCTCGGGCTTCCTTCAGATTCGCGGTCACCCGCGACACCCTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCGTAAGCGCAAc < 7:185486/149‑1 (MQ=17) aTTTTGCCTCGGGCTTCCTTCAGATTCGCGGTCACCCGCGACACCCTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGCTTGCGCTTACGCGCAAc > 4:207693/1‑149 (MQ=17) ttGCCTCGGGCTTCCTTCAGATTCGCGGTCACCCGCGACACCCTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAc‑‑‑gc < 8:122782/148‑1 (MQ=32) cTCGGGCTTCCTTCAGATTCGCGGTCACCCGCGACAACCTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCAATTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCAt > 4:154827/1‑149 (MQ=17) cGGGCTTCCTTCAGATTCGCGGTCACCCGCGACACCCTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGc > 1:192736/1‑149 (MQ=32) gggCTTCCTTCAGATTCGCGGTCACCCGCGACACCCTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGCGTTGCGCGTAAGCGCAAC‑‑‑ccgcttgg < 6:66109/147‑5 (MQ=11) cttcAGATTCGCGGTCACCCGCGACACCCTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGca > 5:320201/1‑149 (MQ=32) ttcAGATTCGCGGTCACCCGCGACACCCTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGca > 6:309933/1‑148 (MQ=32) cAGATTCGCGGTCACCCGCGACACCCTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGcaca > 6:359870/1‑148 (MQ=32) cAGATTCGCGGTCACCCGCGACACCCTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGcaca < 4:218456/148‑1 (MQ=32) aGATTCGCGGTCACCCGCGACACCCTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCAGGCATGgcgcgttg < 5:3201/148‑5 (MQ=12) gATTCGCGGTCACCCGCGACACCCTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGcacaca > 7:108867/1‑148 (MQ=32) aTTCGCGGTCACCCGCGACACCCTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACaa > 3:352630/1‑148 (MQ=32) tCGCGGTCACCCGCGACACCCTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACaaaa > 5:14583/1‑148 (MQ=32) ccGCGACACCCTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCAcccc > 3:346545/1‑148 (MQ=35) gcgACAACCTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCAATTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGaa < 3:154827/149‑1 (MQ=255) cacCCTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGAt > 7:345805/1‑149 (MQ=255) acCCTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATg < 3:181317/149‑1 (MQ=255) cccTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATgg < 8:29747/149‑1 (MQ=255) ccTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGc > 1:250227/1‑149 (MQ=255) ccTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGc > 4:21666/1‑149 (MQ=255) cTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCt < 4:147808/149‑1 (MQ=255) cTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCt < 7:224748/149‑1 (MQ=255) acagccGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTg < 2:326151/145‑1 (MQ=255) ccTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGa < 8:132153/149‑1 (MQ=255) cTCCGGCTAGCACTTACCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAg < 7:110984/149‑1 (MQ=255) tCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCCCTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAgg > 3:58680/1‑149 (MQ=255) tCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAgg > 6:17078/1‑149 (MQ=255) cGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGc < 4:346545/148‑1 (MQ=255) tAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTCGGGGGGGGGGCAACGGAGGGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGc > 1:119937/1‑147 (MQ=17) gCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAgg > 4:341479/1‑149 (MQ=255) aCTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGc > 5:195190/1‑149 (MQ=255) cccTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTAt < 8:345805/148‑1 (MQ=255) ccTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCa < 6:320201/149‑1 (MQ=255) ttGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAg > 5:380710/1‑148 (MQ=255) gtgtgtAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCtt < 5:359870/149‑1 (MQ=255) gtgtgtAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCtt > 2:193055/1‑149 (MQ=255) tgtAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGc < 3:341479/148‑1 (MQ=255) tAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGc < 1:204037/146‑1 (MQ=255) tAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGc > 2:204037/1‑146 (MQ=255) tAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCa < 7:317939/148‑1 (MQ=255) gagGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTc > 6:57768/1‑149 (MQ=255) gagGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAACCCTTGCCAGTc < 8:108867/149‑1 (MQ=255) ggACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCtt < 5:17078/149‑1 (MQ=255) ggACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCtt > 3:15083/1‑149 (MQ=255) tttCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTc > 3:22482/1‑143 (MQ=255) tttCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTc < 4:22482/143‑1 (MQ=255) tttCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTgtag > 5:233033/1‑149 (MQ=255) tttCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGAAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTgtag > 1:102090/1‑149 (MQ=255) tCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTgtag < 6:380710/147‑1 (MQ=255) tCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGAAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTgtag < 5:309933/147‑1 (MQ=255) aCCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTGtagtag < 5:57768/148‑1 (MQ=255) ccTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTg < 6:251410/141‑1 (MQ=255) ccTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTg > 5:251410/1‑141 (MQ=255) aGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTGTAGTAGTTCTCGaa < 2:192736/149‑1 (MQ=255) tCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTGTAGTAGTTCTCGAAg > 8:349782/1‑148 (MQ=255) tCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTGTAGTAGTTCTCGAAg > 4:328177/1‑148 (MQ=255) ccACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTc < 4:329290/126‑1 (MQ=255) ccACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTc > 3:329290/1‑126 (MQ=255) aCTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCTGTAAGCCTTGCCAGTCTTGTAGTAGTTCTCGAAGCAGAAGt > 1:72449/1‑149 (MQ=255) aCTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTGTAGTAGTTCTCGAAGCAGAAGt > 2:29268/1‑149 (MQ=255) ggCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTGTAGTAGTTCTCGAAGCAGAAGTTg < 2:119937/147‑1 (MQ=255) gCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTGTAGTAGTTCTCGAAGCAGAAGTTGGTc < 6:195190/149‑1 (MQ=255) caccacAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTGTAGTAGTTCTCGAAGCAGAAGTTGGTcgc > 8:117658/1‑149 (MQ=255) cacaACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTGTAGTAGTTCTCGAAGCAGaa > 1:56381/1‑137 (MQ=255) cacaACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTGTAGTAGTTCTCGAAGCAGAAGTTGGTCGCGTc > 6:124057/1‑149 (MQ=255) aaCCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTGTAGTAGTTCTCGAAGCAGAAGTTGGTCGCGTCGAt > 7:141780/1‑149 (MQ=255) aaCCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTGTAGTAGTTCTCGAAGCAGAAGTTGGTCGCGTCGAt > 1:244160/1‑149 (MQ=255) ccAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTAt > 4:269223/1‑91 (MQ=255) ccAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTAt < 3:269223/91‑1 (MQ=255) ccAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTGTAGTAGTTCTCGAAGCAGAAGTTGGTCGCGTCGATGt < 4:15083/149‑1 (MQ=255) ccAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTGTAGTAGTTCTCGAAGCAGAAGTTGGTCGCGTCGATGt < 7:349782/149‑1 (MQ=255) cAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTGTAGTAGTTCTCGAAGCAGAAGTTGGTCGCGTCGATGTa < 7:117658/149‑1 (MQ=255) atggcgcGTTGCGCGTAAGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTGTAGTAGTTCTCGaa < 2:98235/122‑1 (MQ=255) atggcgcGTTGCGCGTAAGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTGTAGTAGTTCTCGaa > 1:98235/4‑125 (MQ=255) aaGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGATTATCAGTAAGCCTTGCGAGTCTTGTAGTAGTTCTCGAAGCAGAAGTTGGTCGCGTCGATGTAg > 4:231651/1‑149 (MQ=255) aGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTGTAGTAGTTCTCGAAGCAGAAGTTGGTCGCGTCGATGTAGc < 4:79065/149‑1 (MQ=255) aGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTGTAGTAGTTCTCGAAGCAGAAGTTGGTCGCGTCGATGTAGc > 7:289765/1‑149 (MQ=255) ggTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTGTAGTAGTTCTCGAAGCAGAAGTTGGTCGCGTCGATGTAGCCTTc < 8:141780/149‑1 (MQ=255) ttACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTGTAGTAGTTCTCGAAGCAGAAg > 4:312212/1‑118 (MQ=255) ttACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTGTAGTAGTTCTCGAAGCAGAAg < 3:312212/118‑1 (MQ=255) | GCCAGCATTTTGCCTCGGGCTTCCTTCAGATTCGCGGTCACCCGCGACACCCTTGCCTCCGGCTAGCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAAC‑‑‑GCGCCATGCCTGGCGCACACAAAAAAGCCACCCCGAAGGATGGCTTTGAGGCCAGCAGGGCTTATCAGTAAGCCTTGCCAGTCTTGTAGTAGTTCTCGAAGCAGAAGTTGGTCGCGTCGATGTAGCCTTC > NC_002947/4348890‑4349174 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |