Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,353,888 | C→T | 8.8% | H338H (CAC→CAT) | yrpB → | 2‑nitropropane dioxygenase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,353,888 | 0 | C | T | 8.8% | 157.5 / 3.5 | 57 | H338H (CAC→CAT) | yrpB | 2‑nitropropane dioxygenase |
Reads supporting (aligned to +/- strand): ref base C (25/26); new base T (3/2); total (28/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.51e-01 |
GCGCGAGCTGGGGCCGATGAGCGAGCTTGCACCGCGCTTCCCGCTGGCGGGCGGGGCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGACAGGCAGGCATGGCCTCTTCACGGCCAATGGCTTATCGCTATATAGTTAAGGCTATAACGATAACCTCAAGG > NC_002947/4353741‑4354032 | gcgcGAGCTGGGGCCGATGAGCGAGCTTGCACCGCGCTTCCCGCTGGCGGGCGGGGCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGcaca > 8:173016/1‑149 (MQ=255) gcgAGCTGGGGCCGATGAGCGAGCTTGCACCGCGCTTCCCGCTGGCGGGCGGGGCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATg > 1:141420/1‑149 (MQ=255) tGGGGCCGATGAGCGAGCTTGCACCGCGCTTCCCGCTGGCGGGCGGGGCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTC‑GGGCAGGCGTTACGGCTAGGCCGGCACATGCcggcgg > 6:71807/1‑149 (MQ=255) tggCCGATGAGCGAGCTTGCACCGCGCTTGCCGCTGGCGGGAGGGGCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCATGTGCcggccta < 4:31527/148‑4 (MQ=255) gggCCGATGAGCGAGCTTGCACCGCGCTTCCCGCTGGCGGGCGGGGCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCcggcgg < 8:225928/148‑1 (MQ=255) cGATGAGCGAGCTTGCACCGCGCTTCCCGCTGGCGGGCGGGGCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAg < 7:175252/149‑1 (MQ=255) gcgagcTTGCACCGCGCTTCCCGCTGGCGGGCGGGGCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGAcc > 2:258900/1‑149 (MQ=255) gagcTTGCACCGCGCTTCCCGCTGGCGGGCGGGGCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCg > 6:356494/1‑149 (MQ=255) gagcTTGCACCGCGCTTCCCGCTGGCGGGCGGGGCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTC‑GGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCgg < 5:71807/149‑1 (MQ=255) agcTTGCACCGCGCTTCCCGCTGGCGGGCGGGGCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCgg < 7:326499/149‑1 (MQ=255) cTTGCACCGCGCTTCCCGCTGGCGGGCGGGGCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCgg > 5:217896/1‑147 (MQ=255) gCACCGCGCTTCCCGCTGGCGGGCGGGGCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGAt > 6:294949/1‑149 (MQ=255) aCCGCGCTTCCCGCTGGCGGGCGGGGCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTg > 6:84214/1‑149 (MQ=255) cgcgCTTCCCGCTGGCGGGCGGGGCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGcc < 3:264266/149‑1 (MQ=255) cgcgCTTCCCGCTGGCGGGCGGGGCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGcc < 5:272624/149‑1 (MQ=255) gcTTCCCGCTGGCGGGCGGGGCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGCGTGAGCTGACCCGGGAGATTGCCgg > 2:297938/1‑148 (MQ=255) ttCCCGCTGGCGGGCGGGGCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTaa < 7:14075/149‑1 (MQ=255) cGCTGGCGGACGGGGCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCa > 1:184386/1‑149 (MQ=255) gcgggcggGGCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTgg < 1:258900/148‑1 (MQ=255) cgggcgtgGCATTGATTCCTTTAGGGGCGTTCACCGTTCCGCATGGTAAGTGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGATCTGATCCGGGAGATTGCCGGTAAGGCATTGGCa < 5:364025/149‑1 (MQ=255) gggcgggGCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAg < 5:294949/149‑1 (MQ=255) gggcgggGCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAg > 5:148079/1‑149 (MQ=255) ggggCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGAt < 5:84214/149‑1 (MQ=255) ggggCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGAt > 2:51898/1‑149 (MQ=255) gCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCgg > 1:365052/1‑149 (MQ=255) gCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCgg > 4:216487/1‑149 (MQ=255) gATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCAc > 3:329309/1‑148 (MQ=255) aTGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGGCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCa < 7:217318/149‑1 (MQ=255) cTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCTATGTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCa < 6:236543/131‑1 (MQ=255) cTTTACGGGCGATCACCCATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGCCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTCGCa > 5:236543/1‑131 (MQ=255) tACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCAtt < 6:148079/148‑1 (MQ=255) gggCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGa > 2:142976/1‑149 (MQ=255) gggCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGa < 2:184386/149‑1 (MQ=255) gggCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGa > 1:163466/1‑149 (MQ=255) tCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGAcagg > 8:322838/1‑147 (MQ=255) cGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGACAggcaggca > 3:321228/1‑149 (MQ=255) cGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGAATGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGACAggcaggca > 1:301821/1‑149 (MQ=255) aTCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGACAGGCAGGCATg < 7:4059/149‑1 (MQ=255) aGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGACAGGCAGGCATGGCctct < 2:301821/149‑1 (MQ=255) agagTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGACAGGCAGGCATGGCCTCTTCACgg < 3:216487/149‑1 (MQ=255) agagTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGACAGGCAGGCATGGCCTCTTCACg < 7:173016/148‑1 (MQ=255) gagTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGACAGGCAGGCATGGCCTCTTCACgg > 5:87578/1‑148 (MQ=255) gagTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGACAGGCAGGCATGGCCTCTTCACgg < 6:87578/148‑1 (MQ=255) gTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGACAGGCAGGCATGGCCTCTTCACGGcc > 6:92864/1‑148 (MQ=255) tGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGACAGGCAGGCATGGCCTCTTCACGGCCaa > 5:286713/1‑149 (MQ=255) tCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGACAGGCAGGCATGGCCTCTTCACGGCCAATGGc < 1:142976/148‑1 (MQ=255) aTCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGACAGGCAGGCATGGCCTCTTCACGGCCAATGGCTTATCGc < 1:51898/149‑1 (MQ=255) tgGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGACAGGCAGGCATGGCCTCTTCACGGCCAATGGCTTATCGCtat < 2:141420/147‑1 (MQ=255) ggCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGACAGGCAGGCATGGCCTCTTCACGGCCAATGGCTTATCGCta < 7:313508/135‑1 (MQ=255) ggCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGACAGGCAGGCATGGCCTCTTCACGGCCAATGGCTTATCGCta > 8:313508/1‑135 (MQ=255) gCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGACAGGCAGGCATGGCCTCTTCACGGCCAATGGCTTATCGCTATATAGTTAAGGCtat < 7:322838/149‑1 (MQ=255) cTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGACAGGCAGGCATGGCCTCTTCACGGCCAATGGCTTATCGCTATATAGTTAAGGCTATAACGATaa > 6:209057/1‑148 (MQ=255) acccgCCGGCATGTGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGACAGGCAGGCATGGCCTCTTCACGGCCAATGGCTTATCGCTATATAGTTAAGGCTATAACGATAAc > 4:226763/5‑149 (MQ=255) ccgCCGGCATGTGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGACAGGCAGGCATGGCCTCTTCACGGCCAATGGCTTATCGCTATATAGTTAAGGCTATAACGATAACCt > 2:37369/3‑149 (MQ=255) cgCCGGCATGTGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGACAGGCAGGCATGGCCTCTTCACGGCCAATGGCTTATCGCtat > 5:106061/2‑123 (MQ=255) cgCCGGCATGTGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGACAGGCAGGCATGGCCTCTTCACGGCCAATGGCTTATCGCtat < 6:106061/122‑1 (MQ=255) ggCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGACAGGCAGGCATGGCCTCTTCACGGCCAATGGCTTATCGCTATATAGTTAAGGCTATAACGATAACCTCAAgg < 5:356494/149‑1 (MQ=255) ggCAAATGCCGGCGGGGTAGCTGACCCGGGAGATTGCCGGTAAGGAATTGGCAGTGATCGGTCACCAGGCATTCTGACAGGCAGGCATGGCCTCTTCACGGCCAATGGCTTATCGCTATATAGTTAAGGCTATAACGATAACCTCAAgg < 6:286713/149‑1 (MQ=255) | GCGCGAGCTGGGGCCGATGAGCGAGCTTGCACCGCGCTTCCCGCTGGCGGGCGGGGCATTGATGCCTTTACGGGCGATCACCGATCCGCAGGGTAAGAGTGATTTCAGCAATCTGTGGTCGGGGCAGGCGTTACGGCTAGGCCGGCACATGCCGGCGGGTGAGCTGACCCGGGAGATTGCCGGTAAGGCATTGGCAGTGATCGGTCACCAGGCATTCTGACAGGCAGGCATGGCCTCTTCACGGCCAATGGCTTATCGCTATATAGTTAAGGCTATAACGATAACCTCAAGG > NC_002947/4353741‑4354032 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |