Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_002947 | 1,499,508 | +C | intergenic (+85/‑79) | trpS → / → zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,499,506 | 1 | . | C | 92.9% | 33.8 / ‑3.4 | 15 | intergenic (+83/‑81) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
Reads supporting (aligned to +/- strand): ref base . (1/0); major base C (5/8); minor base G (0/1); total (6/9) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.57e-01 |
CTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCA‑C‑GGCTTTGCCGGTGT‑T‑TCGGG‑CACG‑‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGG‑CCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCT > NC_002947/1499391‑1499635 | cTGAACTACGCCTTGGCACAACAGCAGGAGTTCGGCTGCCAAAGGGTGGGTGCGGGCTTGCCCGCGAAACTGGCGCCGGGGTGCAGGGCAC‑C‑GGCTTGGCCGGTGT‑T‑CGGGG‑GAAGGCCCGCTCCCACAGACTGATTGCCATTAAGCg < 8:19764/148‑1 (MQ=255) aaCGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGGCCCCGCAACCCGCGCCCCCGTGGAAGGCCC‑C‑CGCGTTGGCGGTGT‑TAGCGGG‑CACGC‑CCGCGACCCCAGCCGGATTGCCAATAAGCGGGc > 2:38057/1‑148 (MQ=255) aCGAAGCCTTGGCACCACAGCTGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCAC‑C‑GGCTTTGCCGGTGT‑TCGCGGG‑CACGC‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGc < 2:26782/147‑1 (MQ=21) cagGAGTGAGGCGGCAAAAGGGGGGGCGCGGGCGGGCCCGCTAAACCGGCGCCGGGGGGCA‑GGCCA‑CGGGGTTTGCGGGTGT‑TCGGGGG‑CACGC‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGG‑ccc < 2:28455/148‑1 (MQ=255) aGGCTGCCAAACGGTGGGAGCGGGCGTGCCCCCGCAACCGGCGCCGCGGTGCATGGCAC‑C‑GGCTTTTCCGGTGT‑TAGCGGG‑CCCGC‑CCGCTCCCCCAGCCGGAGTGGCATTAAGCGGGCCTATAGCTACAGTGACGG‑CCCGgtttttt > 8:60150/1‑147 (MQ=16) ggCTGCCAAACGGTGGGAGCGGGCGTGGCCCCGAAACAGGCGCCGCGGTGCCTTGCAC‑C‑CGCTTTTCCGGTGT‑TAGCGGGCCCCC‑‑CCGCGCCCACAGACAGATTTCCATTAAACCGGCCGATAGCGACACTGACGGCCCCGttttttt > 4:52705/1‑147 (MQ=255) ggTGGGAGCGGGCGTGCCCGCTAAACAGGCGCCGCGGTGCATGGCAC‑C‑GGCTTTGCCGGTGT‑TCGCGGG‑CACGC‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGG‑CCCGTTTTTTGTTGCCTCGCTaa < 4:166966/148‑1 (MQ=21) gCGGGGGTGCCCGCGAAACAGGCGCCGCGGTG‑ATGGGCACC‑GGCTTGGCGGGTTT‑TCGCGGG‑CACGC‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGG‑CCCGTTTTTTGTTGCCTCGCTAACGAATCa < 6:17012/148‑1 (MQ=25) ggCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCAC‑C‑GGCTTTGCCGGTGT‑TCGCGGG‑CACGC‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGG‑CCCGTTTTTTGTTGCCTCGCTAACGAATCATGa < 8:141977/148‑1 (MQ=37) gTGCCCGCGAAACCGGCGCCGCGGTGCATGGCAC‑C‑GGCTTTGCCGGGGTGC‑GCGGG‑CACGC‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGG‑CCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTc < 1:132138/148‑1 (MQ=25) cccGCGAAACAGGCGCCGCGGTGCATGGCAC‑C‑GGCTTTGCCGGTGT‑TCGCGGG‑CACGC‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGG‑CCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt < 3:111746/148‑1 (MQ=37) cgcgAAACAGGCGCCGCGGTGCATGGCAC‑C‑GGCTTTGCCGGTGT‑TCGCGGG‑CACGC‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGG‑CCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTc > 2:11582/1‑143 (MQ=37) gcgAAACAGGCGCCGCGGTGCATGGCAC‑C‑GGCTTTGCCGGTGT‑TCGCGGG‑CACGC‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGG‑CCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTcc < 1:11582/143‑1 (MQ=37) aCAGGCGCCGCGGTGCATGGCAC‑C‑GGCTTTGCCGGTGT‑TCGCGGG‑CACGC‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGG‑CCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACg > 5:77372/1‑147 (MQ=37) ccGGTGT‑TCGCGGG‑CACGC‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTCTCGCTACAGTGACGG‑CCCGGGTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCACGCAGATCTGAAACGTCCCGCctgct > 7:161504/1‑148 (MQ=255) | CTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCA‑C‑GGCTTTGCCGGTGT‑T‑TCGGG‑CACG‑‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGG‑CCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCT > NC_002947/1499391‑1499635 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |