Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_002947	1,419,549	+C	intergenic (‑38/+98)	PP_1242 ← / ← PP_1244	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	1,419,548	1	.	C	100.0%	62.8 / NA	20	intergenic (‑37/+99)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (6/14);  total (6/14)

TGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGG‑ATTCTGGGTTGCCTGGGCTGG‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTAC‑TGTGCAGTGCGTGACGGCTG‑TGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGT  >  NC_002947/1419402‑1419674                                                                                                                                                     |                                                                                                                                 tGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGTATTGTTTTGTTTCCCTGG‑ATTCTGGGTTGCCTGggctgg‑c                                                                                                                                 <  2:37996/148‑1 (MQ=255)              cGGGTTCGATGCGGAACAGAGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTAGTCGGTGGGCATTGTTTTTTTTCCCTGG‑ATTCTCGGTTGCCTGGGCTGGCCTCTTCTCgggaa                                                                                                                     >  6:156592/1‑146 (MQ=255)                       tGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGG‑ATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTc                                                                                                            <  8:100174/148‑1 (MQ=255)                        gCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGG‑ATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTcc                                                                                                           <  1:95122/148‑1 (MQ=255)                           gAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGG‑ATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCcac                                                                                                        <  5:141043/148‑1 (MQ=255)                             aCAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGG‑ATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAg                                                                                                      <  6:1292/148‑1 (MQ=255)                                 cGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGG‑ATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTAc                                                                                                  <  3:82787/148‑1 (MQ=255)                                      gAGTGTTGTTTTCGCCTTGGTCGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGG‑ATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTAC‑TGTGc                                                                                            <  7:161670/148‑1 (MQ=255)                                       aGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGGGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGG‑ATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTAC‑TGTGCa                                                                                           <  5:156592/148‑1 (MQ=255)                                                                  ggTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCAGTGGGCATTGTTTTGTTTCCCTGG‑ATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTAC‑TGTGCAGTGCGTGACGGCTG‑TGGTGACCCtgtg                                                               <  2:41605/148‑1 (MQ=255)                                                                   gTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGG‑ATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACCCCCGCTACCACAGGTAC‑TGTTCAGTGCGTGACGGCTG‑TGGTGACCCtgtg                                                               >  2:121725/1‑147 (MQ=255)                                                                     cTTGCCGACTGTGGGGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGG‑ATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTAC‑TGTGCAGTGCGTGACGGCTG‑TGGTGACCCTGTGGGa                                                            <  3:52623/148‑1 (MQ=255)                                                                          cGACTGTGGTGGGTTCTGTTGTGTTGTCTGTGGGCATTGTTTTGTTTCCCTGG‑ATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTAC‑TGTGCAGTGCGTGACGGCTG‑TGGTGACCCTGTGGGAGCggg                                                       <  2:96745/148‑1 (MQ=255)                                                                          cGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGG‑ATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCCCGCCCCCAGGTACATGT‑CAGTGCGTGACCGCTG‑TTGTGACCCAGGGGGCGCcgg                                                       >  8:151905/1‑148 (MQ=255)                                                                          cGACTGTGGTGGGTGCGGTTGTGGTGTCGGTGGGCCTTGTGTTGGTTCCCTGG‑ATGCGGGGGGGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTAC‑TGTGCAGTGCGTGACGGCTG‑GGGTGACCCTGTGGGAGCggg                                                       <  7:66301/148‑1 (MQ=25)                                                                             gtgtgGGGGGGGCTGTTGTGTGGTCGGGGGGCCGTGTTTTGTGTCCCGGG‑ATTCTGGGGGGCCGGGGCGGGCCGCTCCGCGGGCACGCCCGCTCCCACAGGTAC‑TGTGCAGTGCGTGACGGCTG‑TGGTGACCCTGTGGGAGCGGGCGt                                                    <  5:32632/147‑1 (MQ=21)                                                                                     ggTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGG‑ATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGC‑TGTGCAGTGCGTGACGGCTG‑TGGTGCCCCGGTGGGAGCGGGCGTGGCcgc                                              >  5:127141/1‑146 (MQ=38)                                                                                       ttCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGG‑ATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCCCAGGTAC‑TGTGCCGTGCGTGACGGCGG‑TGGTGACCCTGTGGGAGCGGGCCTGCCCCCGAag                                          >  4:147417/1‑148 (MQ=38)                                                                                                   gtCGGTGGGCATTGTTTTGTTTCCCTGG‑ATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTAC‑TGTGCAGTGCGTGACGGCTG‑TGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTg                              >  8:92602/1‑148 (MQ=255)                                                                                                                tgtttgtttCCCCGGTATTCGGGGTTGCCTGGGGGGGCCTCTCCGGGGGCCCGCCCGCTCCAACAGTTAG‑TGTCCTGTGC‑TGGCGGCCGTTGGTGCCCCTGGGGTTGTGGGCGTCCCCGCGAAGAGGCCTGACCTGCTAATGCAAGgt                  <  4:149407/146‑1 (MQ=255)                                                                                                                                aTTGTGGGTTGCCTGGGCTGGCCTCTCCGCGGGCACGCCCGCGCCCACTGGTAC‑TGTGCTGTGCGTGACGCCTG‑GGGTGCCCGTGGGGGAGGGGGGGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGt  <  6:127141/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                 TGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGG‑ATTCTGGGTTGCCTGGGCTGG‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTAC‑TGTGCAGTGCGTGACGGCTG‑TGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGT  >  NC_002947/1419402‑1419674

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑