| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1844134 = | 0 (0.000) | 33 (1.030) | 30/278 | 0.2 | 68.8% | coding (660/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | = 2179376 | 30 (0.930) | intergenic (+175/+93) | PP_1931/PP_5486 | hypothetical protein/hypothetical protein | |||||
CACCAGCCTGTTGCTGATCCTCGCCTGCCTGGCACTCAGCGGCCTGTTGGCGCTGCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1844281‑1844134‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaccCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTGAGGTCTTTTG < NC_002947/2179376‑2179233 CACCAGCCTGTTGCTGATCCTCGCCTGCCTGGCACTCAGCGGCCTGTTGGCGCTGCGCATGAGCCGCACCATCGACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGAC > 6:13483/1‑147 CAGCCTGTTGCTGATCCTCGCCTGCCTGGCACTCAGCGGCCTGTTGGCGCTGCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAG > 6:67194/1‑148 TTGCTGATCCTCGCCTGCCTGGCACTCAGCGGCCTGTTGGCGCTGCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTG > 8:106913/1‑147 GCTGATCCTCGCCTGCCTGGCACTCAGCGGCCTGTTGGCGCTGCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTG > 1:14974/1‑147 TGATCCTCGCCTGCCTGGCACTCAGCGGCCTGTTGGCGCTGCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAA < 8:7104/148‑1 GATCCTCGCCTGCCTGGCACTCAGCGGCCTGTTGGCGCTGCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAA > 5:5507/1‑147 CTGCCTGGCACTCAGCGGCCTGTTGGCGCTGCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAA < 1:53764/148‑1 CTGGCACTCAGCGGCCTGTTGGCGCTGCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCG < 1:124245/148‑1 CTGGCACTCAGCGGCCTGTTGGCGCTGCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGC < 1:5060/147‑1 GGCGCTGCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTA < 7:113112/148‑1 GCGCTGCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTA < 5:29842/147‑1 AACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAA > 5:181013/1‑148 ACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAGTTTGGCAAGcct < 6:70149/148‑4 GACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATT < 1:151189/148‑1 CATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTG < 7:106913/148‑1 CATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTG > 6:18561/1‑148 CGAACGCATCAAGCACGAGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTT < 1:24948/148‑1 AACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTA > 1:54949/1‑148 AGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATC > 5:82415/1‑148 ACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCC > 1:38218/1‑148 AATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGG > 5:23763/1‑148 TCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGC > 6:95999/1‑148 TCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATG > 4:79321/1‑148 TCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATG > 3:180868/1‑148 CCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATG > 7:97619/1‑146 CACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGA > 7:40708/1‑148 CACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGA < 3:31591/148‑1 ACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAG < 2:54949/148‑1 CTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTC > 5:23020/1‑148 AAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTC < 6:5507/148‑1 CGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTGAG < 5:13483/148‑1 CGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTGAG > 4:63887/1‑148 TGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTG > 8:170247/1‑142 GCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTGA < 7:170247/142‑1 GACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTGAGGTCTTTTG < 5:95235/148‑1 CACCAGCCTGTTGCTGATCCTCGCCTGCCTGGCACTCAGCGGCCTGTTGGCGCTGCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1844281‑1844134‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaccCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTGAGGTCTTTTG < NC_002947/2179376‑2179233 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |