| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1499458 | 19 (0.570) | 8 (0.240) | 8/284 | 2.3 | 32.2% | intergenic (+35/‑129) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| ? | NC_002947 | = 1499495 | 15 (0.460) | intergenic (+72/‑92) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein | |||||
GGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCA‑C‑GGCTTTGCCGGTGT‑T‑TCGGG‑CACG‑‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGG‑CCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCT > NC_002947/1499325‑1499596 | ggCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGt < 6:76880/148‑1 (MQ=255) cGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGc < 4:65266/148‑1 (MQ=255) gCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATg < 7:133282/148‑1 (MQ=255) gACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCAC‑C‑GGCtt < 8:144655/148‑1 (MQ=255) gCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCAC‑C‑GGCTTTGCCg < 8:107476/148‑1 (MQ=255) gCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGACCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCAC‑C‑GGCTTTGCCg < 4:169204/148‑1 (MQ=255) gACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCGGCCAAACGGGGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCAC‑C‑GGCTTTGCCGGTGttcgcgg > 1:94325‑M2/1‑141 (MQ=255) gACAACGCGGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCAC‑C‑GGCTTTGCCGGTGttcgcg > 2:49439‑M2/1‑141 (MQ=255) aCAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAcaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcg > 6:59607‑M1/1‑103 (MQ=255) cAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAcaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgg < 5:59607‑M1/146‑45 (MQ=255) cGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCAC‑C‑GGCTTTGCCGGTGttcgcgggcacg > 1:119149‑M2/1‑136 (MQ=255) gCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGCAACAGGCGCCGCGGGGCCTGGCAC‑C‑CGCGTTGCCGGGGttagcgggcccgc < 7:19764‑M2/148‑14 (MQ=255) tGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGCAACAGGCGCCGCGGTGCATGGCCC‑C‑GGCGTTGCCGGTGttcgcgggcccgccc < 7:57613‑M2/148‑16 (MQ=255) cGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCAC‑C‑GGCTTTGCCGGTGttcgcgggcacgcccgctccc < 4:111746‑M2/147‑22 (MQ=255) cTGAACTACGCCTTGGCACAACAGCAGGAGTTCGGCTGCCAAAGGGTGGGTGCGGGCTTGCCCGCGAAACTGGCGCCGGGGTGCAGGGCAC‑C‑GGCTTGGCCGGTGT‑T‑CGGGG‑GAAGGCCCGCTCCCACAGACTGATTGCCATTAAGCg < 8:19764/148‑1 (MQ=255) aaCGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGGCCCCGCAACCCGCGCCCCCGTGGAAGGCCC‑C‑CGCGTTGGCGGTGT‑TAGCGGG‑CACGC‑CCGCGACCCCAGCCGGATTGCCAATAAGCGGGc > 2:38057/1‑148 (MQ=255) aCGAAGCCTTGGCACCACAGCTGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCAC‑C‑GGCTTTGCCGGTGT‑TCGCGGG‑CACGC‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGc < 2:26782/147‑1 (MQ=21) cagGAGTGAGGCGGCAAAAGGGGGGGCGCGGGCGGGCCCGCTAAACCGGCGCCGGGGGGCA‑GGCCA‑CGGGGTTTGCGGGTGT‑TCGGGGG‑CACGC‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGG‑ccc < 2:28455/148‑1 (MQ=255) aGGCTGCCAAACGGTGGGAGCGGGCGTGCCCCCGCAACCGGCGCCGCGGTGCATGGCAC‑C‑GGCTTTTCCGGTGT‑TAGCGGG‑CCCGC‑CCGCTCCCCCAGCCGGAGTGGCATTAAGCGGGCCTATAGCTACAGTGACGG‑CCCGgtttttt > 8:60150/1‑147 (MQ=16) ggCTGCCAAACGGTGGGAGCGGGCGTGGCCCCGAAACAGGCGCCGCGGTGCCTTGCAC‑C‑CGCTTTTCCGGTGT‑TAGCGGGCCCCC‑‑CCGCGCCCACAGACAGATTTCCATTAAACCGGCCGATAGCGACACTGACGGCCCCGttttttt > 4:52705/1‑147 (MQ=255) ggTGGGAGCGGGCGTGCCCGCTAAACAGGCGCCGCGGTGCATGGCAC‑C‑GGCTTTGCCGGTGT‑TCGCGGG‑CACGC‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGG‑CCCGTTTTTTGTTGCCTCGCTaa < 4:166966/148‑1 (MQ=21) gggAGCGGGCGTGCCCGCGAAcaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcccgctcccaccgtttggcagcctcagtcctgctgtggtgccaaggcttcgttcaggctctgaatggccgcatcacg < 4:111746‑M1/147‑127 (MQ=255) gCGGGGGTGCCCGCGAAACAGGCGCCGCGGTG‑ATGGGCACC‑GGCTTGGCGGGTTT‑TCGCGGG‑CACGC‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGG‑CCCGTTTTTTGTTGCCTCGCTAACGAATCa < 6:17012/148‑1 (MQ=25) gggcgggcCCGCGAAcaccggcaacgccggggccatgcaccgcggcgcctgttgcgcgggcacgcccgctcccaccgtttggcagcctcagtcctgctgtggtgccaaggcttcgttcaggctctgaatggccgcatcacgggcttca < 7:57613‑M1/148‑134 (MQ=255) ggCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCAC‑C‑GGCTTTGCCGGTGT‑TCGCGGG‑CACGC‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGG‑CCCGTTTTTTGTTGCCTCGCTAACGAATCATGa < 8:141977/148‑1 (MQ=37) gCGGGCCCGCTAAccccggcaacgcgggtgccaggccccgcggcgcctgttgcgcgggcacgcccgctcccaccgtttggcagcctcagtcctgctgtggtgccaaggcttcgttcaggctctgaatggccgcatcacgggcttcagc < 7:19764‑M1/148‑136 (MQ=255) cGTGCCCGCGAAcaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcccgctcccaccgtttggcagcctcagtcctgctgtggtgccaaggcttcgttcaggctctgaatggccgcatcacgggcttcagcg > 1:119149‑M1/1‑12 (MQ=255) gTGCCCGCGAAACCGGCGCCGCGGTGCATGGCAC‑C‑GGCTTTGCCGGGGTGC‑GCGGG‑CACGC‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGG‑CCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTc < 1:132138/148‑1 (MQ=25) cccGCGAAACAGGCGCCGCGGTGCATGGCAC‑C‑GGCTTTGCCGGTGT‑TCGCGGG‑CACGC‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGG‑CCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt < 3:111746/148‑1 (MQ=37) ccGCGAAcaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcccgctccccccgtttggccgcctcagtcctgctgtggtgccaaggcttcgttcaggctctgaatggccgcatcacgggcttcagcgttgtc > 1:94325‑M1/1‑7 (MQ=255) ccGCGAAACAGGCGCCGCGGTGCATGGCAC‑C‑GGCTTTGCCGGTGttcgcgggcacgcccgctcccaccgtttggcagcctcagtcctgctgtggtgccaaggcttcgttcaggctctgaatggccgcatcacgggcttcagcgttg < 5:59607‑M2/146‑103 (MQ=255) cgcgAAcaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcccgctcccaccgtttggcagcctcagtcctgctgtggtgccaaggcttcgttcaggctctgaatggccgcatcacgggcttccgcgttgtc > 2:49439‑M1/1‑6 (MQ=255) cgcgAAACAGGCGCCGCGGTGCATGGCAC‑C‑GGCTTTGCCGGTGttcgcgggcacgcccgctcccaccgtttggcagcctcagtcctgctgtggtgccaaggcttcgttcaggctctgaatggccgcatcacgggcttcagcgttgt > 6:59607‑M2/1‑43 (MQ=255) cgcgAAACAGGCGCCGCGGTGCATGGCAC‑C‑GGCTTTGCCGGTGT‑TCGCGGG‑CACGC‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGG‑CCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTc > 2:11582/1‑143 (MQ=37) gcgAAACAGGCGCCGCGGTGCATGGCAC‑C‑GGCTTTGCCGGTGT‑TCGCGGG‑CACGC‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGG‑CCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTcc < 1:11582/143‑1 (MQ=37) | GGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCA‑C‑GGCTTTGCCGGTGT‑T‑TCGGG‑CACG‑‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGG‑CCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCT > NC_002947/1499325‑1499596 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |