New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4808174 =	0 (0.000)	12 (0.480)	11/218	1.2	70.6%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988935	10 (0.400)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

ATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACA  >  NC_002947/4808030‑4808319                                                                                                                                                 |                                                                                                                                                  acgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCcg                                                                                                                                                <  8:116530‑M1/4‑1 (MQ=255)   gtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCcgc                                                                                                                                               <  7:55506‑M1/5‑1 (MQ=255)     ttgtttcgggcctgttattcctgggggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcgggcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGaa                                                                                                                                            >  8:44039‑M1/141‑148 (MQ=255)          tGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGGTTTCAGCGCCTTGGAGGTGTTCGCCGGGCGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgct                                                                                                                                       <  4:119101‑M1/148‑8 (MQ=255)               ccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCcgcgcg                                                                                                                                  <  5:83634‑M1/18‑1 (MQ=255)                taatTGGCGCTTTGGCGGTTAGGTGTTTGGCGTTAGGTTTTCAGGGCCTTGGAGGTGTTGGCCGGTTTATTTTCAGCGGCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgg                                                                                                                                 <  4:106800‑M1/147‑14 (MQ=255)                    tCGCGCTTTGGCGGGTAGGGGTTTGGCGGGAGGGTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaa                                                                                                                             <  2:24688‑M1/148‑18 (MQ=255)                      gcgcTTTGGCGGGTAGGTGTTGGGCGGGAGGGTGTCAGCGCCTGGGCGGTGTTCGCCGGGGGATTTGCAGCGCCTGGGAGGTGGTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaa                                                                                                                            <  5:85058‑M1/147‑19 (MQ=255)                        cctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggttgaCCCGCGAAGCGCCGCGCGGGCGGCGCt                                                                                                                         <  1:68628‑M1/27‑1 (MQ=255)                          tgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCg                                                                                                                       <  2:35938‑M1/29‑1 (MQ=255)                               cGGGTAGGTGTTTGGCGGGAGGGTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTACAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctccta                                                                                                                  <  5:169688‑M1/148‑29 (MQ=255)                                         tttGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttc                                                                                                        >  1:161135‑M1/1‑110 (MQ=255)                                               gggAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTCTTCGCCGGGAGAGTTTCAGCGCCTCGGAGATCGAGCGCCGCACGCGcggcgcttcgcgggtaaaaccgcaccaacgtttgttgagggcc                                                                                                   >  3:157608‑M1/1‑104 (MQ=255)                                                      ttgccgcgcctgggAGGTGTTCGCCGGGTGATTTTCAGCGCCGGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattc                                                                                           <  3:101756‑M1/143‑52 (MQ=255)                                                         cctcgcgtggGAGGGGGTCGCCGGGGGATTTTCAGCGCCTGGGAGGGGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcct                                                                                         <  3:10003‑M1/144‑54 (MQ=255)                                                          aGCGCCTGGGAGGTGTTCGCCGGGGTATTTTGAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGctgcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctg                                                                                        <  5:95450‑M1/147‑55 (MQ=255)                                                              tcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACAcc                                                                                    <  1:96155‑M1/64‑1 (MQ=255)                                                                                 acaaggcggtcgcgagcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGCTCTCACAGGCGCTGAAAATCCTCCGGCAAACCCCTCAAAATTCCAACGCCGTcc                                                                <  6:116352‑M1/84‑1 (MQ=255)                                                                                   aaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCACCGCCgtcccc                                                              <  3:13900‑M1/86‑3 (MQ=255)                                                                                    aggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCAc                                                              <  1:26983‑M1/86‑1 (MQ=255)                                                                                            gcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTc                                                     >  6:42401‑M1/54‑148 (MQ=255)                                                                                              gcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCa                                                   <  8:36236‑M1/97‑1 (MQ=255)                                                                                                   gAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcg                                              >  8:122146‑M1/1‑52 (MQ=255)                                                                                                      ggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGAGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACgccgcc                                           <  8:140739‑M1/105‑1 (MQ=255)                                                                                                       tgtgCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgt                                           <  2:161135‑M1/147‑100 (MQ=255)                                                                                                       tgtTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtc                                          <  4:121518‑M1/148‑101 (MQ=255)                                                                                                              cGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaa                                   <  7:122146‑M1/148‑108 (MQ=255)                                                                                                               gggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCaaaa                                  <  3:113611‑M1/114‑1 (MQ=255)                                                                                                                 gagaGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtac                                      >  1:57694‑M1/1‑38 (MQ=255)                                                                                                                  agagTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtaca                                     <  2:57694‑M1/142‑106 (MQ=255)                                                                                                                              aaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGTCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTACACCGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCCAACTACCAacgccgccgc                   <  7:132803‑M1/129‑3 (MQ=255)                                                                                                                                catgagatcgAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttctggccaatccctcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgc                 <  5:21628‑M1/145‑126 (MQ=255)                                                                                                                                           ggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATc       <  5:75204‑M1/141‑1 (MQ=255)                                                                                                                                            cgccgcCCGCGcggcgctgcgcgggtaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggag     <  1:169963‑M1/148‑138 (MQ=255)                                                                                                                                             gccgccCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagg    <  5:61194‑M1/148‑139 (MQ=255)                                                                                                                                                aCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCcaaca  <  2:121830‑M1/146‑1 (MQ=255)                                                                                                                                                aCCCGCGAAGAGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTCAAAAGCCTCCGGCTAAGACGTCTAAATTCCAACGCCTACCACGCAAAATTCCAACGCCGCCCCCTCAAAATTGCAACGCCGCCTCCCCTCGAAAATCcaaca  >  6:99035‑M1/2‑147 (MQ=255)                                                                                                                                                 |                                                                                                                                                  ATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACA  >  NC_002947/4808030‑4808319

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.