New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2837075 | 2 (0.060) | 6 (0.200) | 4/264 | 3.3 | 71.3% | intergenic (‑27/+156) | sad‑I/PP_2489 | NAD+‑dependent succinate semialdehyde dehydrogenase/xenobiotic reductase |
? | NC_002947 | 2837172 = | 3 (0.100) | intergenic (‑124/+59) | sad‑I/PP_2489 | NAD+‑dependent succinate semialdehyde dehydrogenase/xenobiotic reductase | |||||
Rejected: Coverage evenness skew score above cutoff. |
TGGCATGGTGGCATGGTGGCATGGTGGCATGGTGGCATGGTGGCATGGTGGAATGGTGGCATGAAAAGCTCCGGTCTTTCCGTACGTGGTGACAGGGGCTGAAACTCGGATTACTCCACCGGCGTATACCGTTCGAGCCAGTGGGCGTAAGGGGGGGGCAGTACCCATGCGGGGCGCTCG > NC_002947/2837121‑2837300 | tggcatggtggcatggtggcatggtggcatggtggcatggtggcatggtggAATGGTGGCATGAGACGCTCCGGGGTTTCCGTACGTGGTGACAGGGGCTGAAACGCGGATTACTCCACCGGCGTATACCGGTCGAGCCAGGGGGc > 4:14209/1‑146 (MQ=25) tggcatggtggcatggtggAATGGTGGCATGAAAAGCTCCGGTCTTTCCGTACGTGGTGACAGGGGCTGAAACTCGGATTACTCCACCGGCGTATACCGTTCGAGCCAGTGGGCGTAAGGGGGGGGCAGTACCCATGCGGGGCGCTCg > 2:92534/1‑148 (MQ=255) tcgcatggttgcatggttgAATGGGGGCATTAAAAGCTCCGGTCTTTCCGTACGTGGTGAGAGGGTCTGAAACTCGGATTACTCCACCGGCGTATACCGTTCGAGCCAGTGGGCGTAAGGGGGGGGCAGTACCCATGCGGGGCGCTc < 8:142656/145‑1 (MQ=255) | TGGCATGGTGGCATGGTGGCATGGTGGCATGGTGGCATGGTGGCATGGTGGAATGGTGGCATGAAAAGCTCCGGTCTTTCCGTACGTGGTGACAGGGGCTGAAACTCGGATTACTCCACCGGCGTATACCGTTCGAGCCAGTGGGCGTAAGGGGGGGGCAGTACCCATGCGGGGCGCTCG > NC_002947/2837121‑2837300 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |