New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4140139 =	39 (1.170)	5 (0.160)	5/272	3.0	11.3%	intergenic (+31/‑234)	PP_3644/PP_5609	monooxygenase subunit/hypothetical protein
	?	NC_002947	4140178 =	42 (1.340)					intergenic (+70/‑195)	PP_3644/PP_5609	monooxygenase subunit/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAACAGCTTGCCCCACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTCCTGACACCTCTTGCACAACAAATATTAT  >  NC_002947/4140033‑4140323                                                                                                                                                  |                                                                                                                                                  caacaGCTTGCCCCACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCttt                                                                                                                                                 >  8:17675/1‑148 (MQ=255)  aacaGCTTGCCCCACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCtttt                                                                                                                                                >  6:14762/1‑148 (MQ=255)    caGCTTGCCCCAGGCGGAGAAGAAGAAGTAGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGGCTGAATCATTGAGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCtttttt                                                                                                                                              <  5:57664/148‑1 (MQ=255)     aGCTTGCCCCACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCttttttt                                                                                                                                             >  2:4910/1‑148 (MQ=255)     aGCTTGCCCCACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGAGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCttttttt                                                                                                                                             >  1:21449/1‑148 (MQ=255)            cccACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAAcc                                                                                                                                      >  5:121950/1‑148 (MQ=255)             ccACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGGGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCt                                                                                                                                     <  3:63816/148‑1 (MQ=255)                cGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGGGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCtgtg                                                                                                                                  <  7:134052/148‑1 (MQ=255)                           agaagTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCtgtg                                                                                                                       <  1:136241/148‑1 (MQ=255)                                   cgcGAGCTGGACATCACCGAAGTGGTCCCGGCGGTCGACGCCATTCCCATGGCCGGACGCCTGGCGGGCCGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCCGTCCCTGTGGGAGCggg                                                                                                               <  5:153533/146‑1 (MQ=255)                                   cTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCggg                                                                                                               <  3:122910/148‑1 (MQ=255)                                    tctaGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGc                                                                                                              <  4:92200/145‑1 (MQ=255)                                    tCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGc                                                                                                              <  7:63905/148‑1 (MQ=255)                                               atcaAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGGTTTTTTTTGAAACCGGTTCAGTCACTGTTGGAGCGGGCAAGCCcgc                                                                                                      >  6:130369/1‑145 (MQ=255)                                               atcaAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCGGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGaa                                                                                                   >  1:170446/1‑148 (MQ=255)                                                tcaAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGaa                                                                                                   <  7:17675/147‑1 (MQ=255)                                                 caAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAaga                                                                                                 >  4:116393/1‑148 (MQ=255)                                                  aaGGAAGTGGTGCCGGCGGTCGCCTGAATTCCCATTGCCTGACTCCTTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGGGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAagag                                                                                                <  5:180051/148‑1 (MQ=255)                                                   aGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAagag                                                                                                <  2:170446/147‑1 (MQ=255)                                                    ggAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAgg                                                                                               >  3:122276/1‑147 (MQ=255)                                                    ggAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAgg                                                                                               >  2:18574/1‑147 (MQ=255)                                                    ggAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGc                                                                                              <  2:103849/148‑1 (MQ=255)                                                    ggAAGTGGGGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTGTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGc                                                                                              <  4:60934/148‑1 (MQ=255)                                                         tggtgCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTa                                                                                         <  6:77424/148‑1 (MQ=255)                                                             gCCGGCGGTCGCCTGACTTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCGTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGGGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGa                                                                                     <  4:114186/148‑1 (MQ=255)                                                              ccGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGa                                                                                     >  3:110344/1‑147 (MQ=255)                                                                             aTTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCaa                                                                      <  2:64301/147‑1 (MQ=255)                                                                             aTTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCaa                                                                      <  5:14762/147‑1 (MQ=255)                                                                             aTTCCCATTGCCTGAATCATTGCGAGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCaa                                                                      <  2:21449/147‑1 (MQ=255)                                                                               tCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCTTGCCcgctc                                                                                                    >  4:173861/1‑113 (MQ=255)                                                                                cccATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCTTGCCcgctcc                                                                                                   <  3:173861/115‑4 (MQ=255)                                                                                              cATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTc                                                    <  5:97973/148‑1 (MQ=255)                                                                                                          ggcCCGCTCCGGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCGTGTGGGAGCGGGCAAGCCCGCTAAGATGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCTGCaa                                        <  2:190481/147‑1 (MQ=39)                                                                                                             ccGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAaga                                      >  6:51802/1‑147 (MQ=255)                                                                                                                cTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTACCCCGGCAAGAGaaa                                  <  3:111872/148‑1 (MQ=255)                                                                                                                    cGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAAtt                                <  3:134307/146‑1 (MQ=255)                                                                                                                       gggCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTCCTg                           >  4:19488/1‑148 (MQ=255)                                                                                                                         gCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTCCTGa                          <  4:110344/147‑1 (MQ=255)                                                                                                                           cccTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAAGTTCCTGacac                       >  5:77053/1‑148 (MQ=255)                                                                                                                                  gCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTCCTGACACCTCTTGc                >  4:90759/1‑148 (MQ=255)                                                                                                                                    cTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTCCTGACCCCTCTTGca               >  8:48129/1‑147 (MQ=255)                                                                                                                                        gTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTATAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTCCTGACACCTCTTGCacaa            <  1:4910/146‑1 (MQ=255)                                                                                                                                                gCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTCCTGACACCTCTTGCACAACAAAtattat  >  8:116219/1‑148 (MQ=255)                                                                                                                                                  |                                                                                                                                                  CAACAGCTTGCCCCACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTCCTGACACCTCTTGCACAACAAATATTAT  >  NC_002947/4140033‑4140323

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.