Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,300,170 | Δ1 bp | 7.7% | intergenic (+68/+14) | pvdQ → / ← lpxH | acyl‑homoserine lactone acylase PvdQ/UDP‑2,3‑diacylglucosamine hydrolase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,300,170 | 0 | G | . | 7.7% | 153.6 / 7.2 | 52 | intergenic (+68/+14) | pvdQ/lpxH | acyl‑homoserine lactone acylase PvdQ/UDP‑2,3‑diacylglucosamine hydrolase |
Reads supporting (aligned to +/- strand): ref base G (24/23); new base . (2/2); total (26/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 |
GCAGATCAAGGCAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCATCAGCTTGTGAATCGCT > NC_002947/3300024‑3300313 | gcAGATCAAGGCAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAg < 1:247802/149‑1 (MQ=255) cAGATCAAGGCAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAgg < 8:317671/149‑1 (MQ=255) cAGATCAAGGCAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAgg > 8:180608/1‑149 (MQ=255) gATCAAGGCAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGcc > 5:137913/1‑149 (MQ=255) aGGCAGATCCTGAGTACCGGGAAGTGGTGATTAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGa < 1:315715/140‑1 (MQ=255) aGGCAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGa > 2:315715/1‑140 (MQ=255) gaaGATCCTGAGTACCGGGAAGTGGTGATAAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGACCATTCGCGGGTAAAACAGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGa > 7:142160/3‑138 (MQ=255) gCAGATCCTGAGTACCGGGAAGTGGTGATCATTTAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGa < 8:142160/138‑1 (MQ=255) cataTCCTGAGTACCTGGAAGTGGTGCTCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAAGGGCCTCGCGGGCAAGCCCGC‑AGGccc < 6:266290/139‑1 (MQ=38) cAGAACCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAAGGGCCTCGCGGGCAAGCCCGC‑AGGccc > 5:266290/1‑142 (MQ=38) gATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTc < 5:138151/149‑1 (MQ=255) tACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACt > 3:309670/1‑149 (MQ=255) ccGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGTGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCg < 5:266245/149‑1 (MQ=255) ccGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTc < 4:309670/148‑1 (MQ=255) ccGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCg < 3:126881/149‑1 (MQ=255) ggAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAAc < 7:220546/149‑1 (MQ=255) gtgATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCt > 3:174753/1‑120 (MQ=255) gtgATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCt < 4:174753/120‑1 (MQ=255) gtgATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGcc > 3:3725/1‑148 (MQ=255) gtgATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGcc > 3:8915/1‑148 (MQ=255) gATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAAc > 7:230408/1‑149 (MQ=255) aGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGa < 8:118171/148‑1 (MQ=255) gAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGc > 4:8534/1‑149 (MQ=255) cGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCTCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCt < 1:239325/149‑1 (MQ=255) gACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGtt < 3:183900/149‑1 (MQ=255) cAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGt > 1:149847/1‑146 (MQ=255) aaGGGGGCGGTAGTCAGCCAGCCCTGAGGGGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCg > 8:108197/1‑148 (MQ=255) gggggCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCa < 8:230408/149‑1 (MQ=255) ggggCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCTAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCaa < 3:160604/149‑1 (MQ=255) gTCAGCCAGCCCTGAGGGGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAg < 7:108197/148‑1 (MQ=255) ccagccCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCaa > 5:355979/1‑149 (MQ=255) ccTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCg > 8:256192/1‑149 (MQ=255) cTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAg < 1:111921/76‑1 (MQ=255) cTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAg > 2:111921/1‑76 (MQ=255) gcgcCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGcc > 8:263230/1‑148 (MQ=255) gcCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCAT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGGACGTCAACCTCCAAGGCCCAACCCCGGCGGACCCAGTCCCCCAg > 6:245030/1‑149 (MQ=39) cGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCa < 6:355979/149‑1 (MQ=255) ccATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCa > 1:252068/1‑65 (MQ=255) ccATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCa < 2:252068/65‑1 (MQ=255) aTTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATAc > 3:189418/1‑149 (MQ=255) cgGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGt < 5:245030/149‑1 (MQ=255) tAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTg > 3:151586/1‑99 (MQ=255) tAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTg < 4:151586/99‑1 (MQ=255) aGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCa > 5:217337/1‑149 (MQ=255) ccT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCATCAGc > 2:301549/1‑149 (MQ=255) cT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCATCAGCt < 2:112719/149‑1 (MQ=255) cT‑GCGGGCTTGCCCGC‑AGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGc < 6:192556/133‑1 (MQ=255) cT‑GCGGGCTTGCCCGC‑AGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGc > 5:192556/1‑133 (MQ=255) cGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCATCAGCtt < 7:263230/147‑1 (MQ=255) cGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCATCAGCTtgt < 5:220813/149‑1 (MQ=255) gggCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCATCAGCTtgt > 3:137548/1‑148 (MQ=255) cccGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCATCAGCTTGTGAATCGCt > 2:369928/1‑149 (MQ=255) | GCAGATCAAGGCAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGGCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCATCAGCTTGTGAATCGCT > NC_002947/3300024‑3300313 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |