| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,740,805 | Δ1 bp | 100% | intergenic (+42/+711) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,740,805 | 0 | T | . | 100.0% | 184.9 / NA | 42 | intergenic (+42/+711) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (24/18); total (24/18) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
GCACTGGAAAGAAATGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCCTTTTTTTATTTTTCTGGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACTTGTTGG > NC_002947/4740658‑4740948 | gCACTGGAAAGAAATGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGCACCCAAAAAGGCTGCCCCAGGGCAGCCtt > 3:43857/1‑149 (MQ=255) cTGGAAAGAAATGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttt < 6:192385/149‑1 (MQ=255) tGGAAAGAAATGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttt > 3:158249/1‑148 (MQ=255) gaaagaaaTGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttttat > 1:139034/1‑147 (MQ=255) gaaagaaaTGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttttat > 2:255521/1‑147 (MQ=255) aaagaaaTGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttttatt > 4:226760/1‑146 (MQ=255) agaaaTGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTATGAGCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttttatt > 1:126702/1‑146 (MQ=255) aaaTGCTCTCCAGCCCGTTCAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttttatttgtc > 3:152651/1‑142 (MQ=255) ccAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCACGGGCAGCC‑TTTTTTATTTGTCCTGTGCCgg > 5:229616/1‑149 (MQ=255) ccGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCctct > 5:144006/1‑149 (MQ=255) gATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTcgc < 2:112115/145‑1 (MQ=255) gATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTcgc > 1:112115/1‑145 (MQ=255) cGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTg > 8:293818/1‑149 (MQ=255) cGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTACTGTGCCGGCCTCTTAGCggacatg > 3:220986/1‑144 (MQ=255) cgcgCCAGCTGTACACCTGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGaa < 4:30777/149‑1 (MQ=255) cgcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAaga < 4:56303/149‑1 (MQ=255) gcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGGCAAGGCCGCGAagag < 4:158249/149‑1 (MQ=38) gcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGaa < 8:261423/146‑1 (MQ=255) gcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGaa > 7:261423/1‑146 (MQ=255) ccAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAgg > 7:359243/1‑149 (MQ=255) gCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCg < 7:11842/149‑1 (MQ=255) tACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGca < 7:293818/148‑1 (MQ=255) cGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCGCGCGGAGAGGCGGGcggcgagc > 4:339545/1‑142 (MQ=255) cAGATGCGCGACTTCGTTCCCGTCAAACACCGCATGTAAGCGGCCGTA‑G‑CCGACCGCACCACGGGGGCCCTCGGGCTGCC‑TTTTTTATTTGTCCTGGGCCGGCCTCTCCGCGGCCTTGCCCGCTAAGAGGCCGGCACAGACACCACaaa < 8:359243/149‑1 (MQ=255) cAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACaa > 6:207209/1‑148 (MQ=255) tctaCATCGTTGCCCTTAAAGACCGCAAGTAAGCTGCATTA‑G‑CCTAACGCAATAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCTAAGAGGCCGGCACAGACACCACAAAACCTCa < 2:49412/145‑1 (MQ=255) cATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCa > 1:49412/1‑144 (MQ=255) cccTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTccgc < 5:207209/148‑1 (MQ=255) ccTGAAAGCCCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttttat > 6:231788/1‑66 (MQ=255) ccTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttttat < 5:231788/68‑3 (MQ=255) tGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGGCAAGGCCGCGAaga > 3:205659/1‑106 (MQ=25) tGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGGCAAGGCCGCGAaga < 4:205659/106‑1 (MQ=25) tGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTccgcccgc > 7:292444/1‑149 (MQ=255) aacccccGCAATTACGCGGCAGCC‑C‑CCCAACGCAATACGGCTGCCCTCGGGCTGCC‑TTTTTTATTTGTCCTGCCCCGGCCTCTTCGCGGCCTTCCCCGCTAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTc < 6:144006/144‑1 (MQ=255) gACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCATAGCGGCCTTGCCCGCGGAGAGGCCGGCACAGACACCACAAAACCACAGGTTTTCTccgagaacgg > 6:89621/1‑139 (MQ=255) gACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCGGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCGCTTGGGGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTcc < 5:89621/138‑1 (MQ=255) cGCAATTAAGCTGCAGTA‑G‑CCGAACGCAAGATGGCTGCCCTCGGGCTGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGcaca < 4:93295/108‑1 (MQ=37) cGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGcaca > 3:93295/1‑108 (MQ=38) cGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAg > 5:99882/1‑149 (MQ=255) gTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACCCCCCAAACCCTCAGtt > 8:263622/1‑123 (MQ=38) gTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGtt < 7:263622/123‑1 (MQ=39) cgcggCAGAA‑G‑CCGAACGCAAGACGGCTGCCCTCGGGAAGCC‑TTTTTTATTTGCCCTGTGCCGGCCTCTGCGCGGCCTGGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCa < 3:226760/145‑1 (MQ=255) cTGCAGTA‑G‑CCTAACGCAAGACGGCTGCCCTCGGGAAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGATGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAgg < 6:99882/149‑1 (MQ=255) ccGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAAc < 8:292444/149‑1 (MQ=255) gCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCCCGGCCTTGCCCGCGAAGCGGCCCGCACAGACCCCACAAAACCTAAGTTTTTATCCGCCCCCACACGCAGCCCTTTCAGGGGATTGAACGgcgc > 8:269391/1‑148 (MQ=255) aagaagGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACCGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATc > 6:134336/1‑149 (MQ=255) aagaagGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATc > 4:313669/1‑149 (MQ=255) aagaagGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATc > 5:79972/1‑149 (MQ=255) aaaagGCTGCCCGAGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGGTTTTCTCCGCCCGCGCACGCAGCCCGTTGAGGGTATTGAACGGCGCAtgc > 7:54012/3‑147 (MQ=255) aagGCTGCCCGAGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGATGCCGGCACAGACACCACAAAACCACAGATTTTCTCCGCCCGCTCACGCACCCCGTTCCGGGGATTTAACGGCGCATccac > 4:314220/1‑149 (MQ=255) ggCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGGAGAGGCCGGGACAGACACCACCAAACCTCAGTTTTTGTCCGCCCGCTACCGCCGCCCTTTCAGGGTATTGAACGGGGCATGCACCACGAACttgttg > 2:278065/1‑149 (MQ=255) gCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACTTGTTgg > 5:377117/1‑149 (MQ=255) | GCACTGGAAAGAAATGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTA‑G‑CCGAACGCAAGAAGGCTGCCCTCGGGCAGCCTTTTTTTATTTTTCTGGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACTTGTTGG > NC_002947/4740658‑4740948 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |